PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g16550.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 506aa    MW: 55562.6 Da    PI: 6.8277
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g16550.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000524024341855
                      HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++  L++++ +      +K + a++L +A+ YIk Lq
  Vradi08g16550.1 402 DKITALQQIVSPF-----GKTDTASVLFEAIGYIKFLQ 434
                      7888889988887.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.381384433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-9399451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-8399441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-4402438No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MTEESAGNTV ATSITPLNWW YLQANSISSW NDSNNTWNNQ PNPNSSSSCE EDISVSTSFT  60
NASNHSTLTV ESSRRLIDPP APSSNDFMGE HASDNQLWTH VLSGVGSNGE LQSGQDIGEN  120
FLGALSSKSM TSTMFQPVCD YLKKLDHTSW EYSGSTSLNS FEKHLNGFSE AMIENNERLT  180
KLSNLVSTCS IAPPDPEVSS HFDPQTNNMT LNSSMDHFPQ SDHFKQPFGD STCSLGGVAN  240
RNSGVFPSYD HDTKVKQEFH ASEVQGSVYG KSLNANGYQN GFNGFSVGDS CKLYHGMPNL  300
PPCTRNFSDV ISFNSRFGRP VIGIHAQKPS MKYLNASEPK KQGLQAPSPI RSNINGKGEG  360
TTREVKKKRS EESSDAMLKK LKQDTSTVSS SKVQAPKVKL GDKITALQQI VSPFGKTDTA  420
SVLFEAIGYI KFLQEQVQLL SNPYLKANCH KDPWGSLDRK DKDDTKLDLR SRGLCLVPTS  480
CTPLVYRESS GPDYWTPAYR GCLYR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g16550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512631.10.0transcription factor bHLH111 isoform X1
TrEMBLA0A1S3V2Q50.0A0A1S3V2Q5_VIGRR; transcription factor bHLH111 isoform X1
STRINGXP_007143772.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101162629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.13e-51bHLH family protein