PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g09530.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 600aa    MW: 66793.6 Da    PI: 6.7459
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g09530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH451.9e-14399445455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Vradi08g09530.1 399 NHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYVKQLR 445
                      7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.7E-539186IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.606395444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-19397464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-12399444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.55E-16399449No hitNo description
Gene3DG3DSA:4.10.280.104.7E-19399462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18401450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MAAPLGNRLQ SMLQAAVQSV HWTYSLFWQL CPQQVILVWG DGYYNGAIKT RKTVQPMEVS  60
AEEASLQRSQ QLRELYESLS AGETNPPTRR PCAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKTVVCIPLL DGVVEFGTTD KVQEDLNFIH  180
HVKTFFAEHH HPLPPKPALS EHSTSNPISS SDHIPAVMYT MEDVTRAEPS ELMQLELPED  240
IRVGSPNDGS NNLDSDFHLL AVSQGGNAAG QAESSVRWGP SEEALQVQLP ASEDLTQEDN  300
HYSETVSNIL QNQSSRWPTS PTSVGYITYS THSAFTKWSS RASHLFHPAV DGPSQWLLKY  360
ILFTVPYLHA KNPAETSPQT AADPKLRGKG TPQDELSANH VLAERRRREK LNERFVILRS  420
LVPFVTKMDK ASILGDTIEY VKQLRRKIQE LEARNRHTEA EHRSKLPEVT VQRTSSNSSK  480
EQQRSGVTVM EKRKVRIVEG VAAKATAVEA ETATSVQVSI IESDALLEIE CVHREGLLLD  540
VMQMLREVRI EVIGVQSTLS NGVFMAELRA KVKEHANGKK VSIVEVKKAL NQIIPHPLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-2371867192Transcription factor MYC3
4rqw_B1e-2371867192Transcription factor MYC3
4rs9_A1e-2371867192Transcription factor MYC3
4yz6_A1e-2371867192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1403408ERRRRE
2404409RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g09530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512597.10.0truncated basic helix-loop-helix protein A
RefseqXP_022640833.10.0truncated basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A1S3V3370.0A0A1S3V337_VIGRR; truncated basic helix-loop-helix protein A
STRINGGLYMA02G16670.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-167bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]