PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g09150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HSF | ||||||||
Protein Properties | Length: 518aa MW: 60080.1 Da PI: 8.1742 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 95.5 | 5.6e-30 | 217 | 295 | 15 | 102 |
GTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 15 lkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102 ++++isws++g+sfvv+d+++f+ +Lp+yFkhsnf+SFvRQLn+YgF+k++ ++ w+F+++ F +g+k+ll++i+r+k+ Vradi08g09150.1 217 TNHVISWSRDGTSFVVWDPHTFSAILLPRYFKHSNFSSFVRQLNTYGFRKIDPDR---------WQFANEGFIRGHKHLLKSIRRRKT 295 689*************************************************999.........*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03004 | 1.5E-10 | 17 | 140 | IPR004252 | Probable transposase, Ptta/En/Spm, plant |
SMART | SM00415 | 2.5E-39 | 213 | 293 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.26E-28 | 217 | 293 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.0E-30 | 217 | 293 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 7.8E-27 | 217 | 293 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-9 | 242 | 254 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 243 | 267 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-9 | 255 | 267 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 518 aa Download sequence Send to blast |
MFKDARIARQ CPYWVREHVW NSIMAHWNSP QYRIKCATAK KNRASEKGGV LDTEGSITTH 60 EHAIHMVFTQ THLRKGTDTY VDERSHKTIV RRFFYEIDTC EIRGGSALDA NSRVDADDEI 120 IRTQCWVKAV GEKKKGQLYG AYDSLLARFD NLENLVKTLI PLQENNYNEK INARYRQPTT 180 FANPSSFALH YRGRFPLSNI DSFIPFGNTE GQKAIVTNHV ISWSRDGTSF VVWDPHTFSA 240 ILLPRYFKHS NFSSFVRQLN TYGFRKIDPD RWQFANEGFI RGHKHLLKSI RRRKTPSQLT 300 QSHSVEVGRF ELDKEVDRLK HDKIVLMMEL MNLRQQQQKA RMCIKEMEQR LQVTEFKQKH 360 MMAFLARAIK NPAFIHQLQK KEKRKDLEEA LTKKRRQIEQ GVRGIGESSS RGEGRSSVKV 420 EALEFAGCDC DFGVSELEKL AMEMQGCGKG RIDREVEEPE ALESQERLDR VLDEEFWEEL 480 MFSEKFDGRF DIPTAEDNDE DVVNILANEL GCLDSSH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 6e-16 | 217 | 295 | 33 | 122 | Heat shock factor protein 1 |
5d5u_B | 7e-16 | 217 | 295 | 42 | 131 | Heat shock factor protein 1 |
5d5v_B | 7e-16 | 217 | 295 | 42 | 131 | Heat shock factor protein 1 |
5d5v_D | 7e-16 | 217 | 295 | 42 | 131 | Heat shock factor protein 1 |
5hdg_A | 6e-16 | 217 | 295 | 23 | 112 | Heat shock factor protein 1 |
5hdn_A | 6e-16 | 217 | 295 | 23 | 112 | Heat shock factor protein 1 |
5hdn_B | 6e-16 | 217 | 295 | 23 | 112 | Heat shock factor protein 1 |
5hdn_C | 6e-16 | 217 | 295 | 23 | 112 | Heat shock factor protein 1 |
5hdn_D | 6e-16 | 217 | 295 | 23 | 112 | Heat shock factor protein 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g09150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022640423.1 | 0.0 | heat stress transcription factor A-7a | ||||
TrEMBL | A0A1S3V7G1 | 0.0 | A0A1S3V7G1_VIGRR; heat stress transcription factor A-7a | ||||
STRING | XP_007144664.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 3e-86 | heat shock transcription factor A6B |