PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g03420.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 218aa    MW: 24171.6 Da    PI: 8.0332
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g03420.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.7e-134894354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     r+h+e+E+rRR+riN  +++Lr+llP +      K +Ka+ L k+ve +k+L
  Vradi08g03420.1 48 RNHKEAEKRRRERINAHLNKLRTLLPCN-----SKTDKASLLAKVVERLKEL 94
                     58*************************8.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.654594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.95E-124897No hitNo description
PfamPF000102.7E-104894IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1349101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-1449104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1051100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.9E-4135196No hitNo description
CDDcd048738.66E-5135183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MLHQIEMDHS ELFQFLSNTN GSFFPESASS FQPFHAPPLQ DKALAALRNH KEAEKRRRER  60
INAHLNKLRT LLPCNSKTDK ASLLAKVVER LKELKQQMSE ITLCETFPSE TDEVSVLSTS  120
GDESGGDGRV IFKASLCCED RSDLIPDLVK ILKSLHLTTL KAEIATLGGR TRNVLVVATD  180
KDHGVESIHF LDSSLNSLLE HNSTSKRRRV VGPKSIA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205209KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g03420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511443.21e-158transcription factor bHLH106
SwissprotQ9LET02e-69BH107_ARATH; Putative transcription factor bHLH107
TrEMBLA0A1S3UZC91e-156A0A1S3UZC9_VIGRR; transcription factor bHLH106
STRINGXP_007145485.11e-114(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.18e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]