PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g30880.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 302aa    MW: 34103.1 Da    PI: 5.8053
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g30880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30133192159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ldD ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers+ dp v+ +tY+ eH h+
  Vradi07g30880.1 133 LDDAWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSHLDPAVFLVTYTAEHSHP 192
                      58**************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-31119194IPR003657WRKY domain
SuperFamilySSF1182904.05E-26127194IPR003657WRKY domain
PROSITE profilePS5081132.374128194IPR003657WRKY domain
SMARTSM007741.3E-36133193IPR003657WRKY domain
PfamPF031061.4E-25134192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDEFECLRDW DLEAIVRGSS GEATAMDDPN PDFSYFFSDQ DELLDSFPEF SETTRVLDDL  60
EDLYKPFYPV LHPLSPHTIV TTSIEPQQVK ELKASEEKVA LQGFKAPPTP KCKKGKKNQN  120
KSVVKQVTTA EGLDDAWAWR KYGQKPIKGS PYPRSYYRCS SSKGCLARKQ VERSHLDPAV  180
FLVTYTAEHS HPHPTRRNSL AGTTRKNNSL IPPPTTTRNH NTTTCSSRTP LMVQSIEDKL  240
VTSVQQSMDL KKEEQHFVEW FDDGAQFGDA WIPTSDLEKF IGFECQHFAL DGAFTDAYAH  300
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-19120195180Disease resistance protein RRS1
5w3x_D4e-19120195180Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g30880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506866.10.0probable WRKY transcription factor 29
TrEMBLA0A1S3ULD70.0A0A1S3ULD7_VIGRR; probable WRKY transcription factor 29
STRINGXP_007160109.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.11e-32WRKY family protein