PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g29850.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 301aa    MW: 34514.1 Da    PI: 9.5804
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g29850.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix681.9e-2137129185
         trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                      rWt+qe+l+Lie ++ +e+  +  +         +  p+We vs+++++rg++r+++qC+++w nl ++++kik++e++ ++es+s + + +++
  Vradi07g29850.1  37 RWTRQETLVLIESKKMVESGEQG-CrfrsasgfvQSDPKWEMVSSFCQQRGVKRGAVQCRKRWGNLLTDFRKIKKWESGVKEESESFWIMRNDV 129
                      8************9955554442.2233345788*********************************************999998888777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-434104IPR009057Homeodomain-like
PfamPF138376.2E-1236125No hitNo description
PROSITE profilePS500906.59737102IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAEESAEKIC EGVSESPTTT PVGGQTTRRI KATRHPRWTR QETLVLIESK KMVESGEQGC  60
RFRSASGFVQ SDPKWEMVSS FCQQRGVKRG AVQCRKRWGN LLTDFRKIKK WESGVKEESE  120
SFWIMRNDVR KEKKLPGFFD SVVYNVLDGG VCTTVAFPLT LRSCKYCQWC FESATRFQGE  180
RDHRESQKHP LTLNAYSRVN ELCFLQSERE YFGSGFQREP VFQHGYKRKR LSSDSSEDNT  240
DFDNSITKLL RRNSEILKAH LGAQNINYEL ARNQQKQQTD ILVAALGKLT DALTKIADKL  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g29850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022638772.11e-174trihelix transcription factor ASR3-like isoform X3
TrEMBLA0A3Q0F8Q01e-173A0A3Q0F8Q0_VIGRR; trihelix transcription factor ASR3-like isoform X3
STRINGGLYMA08G01050.21e-141(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.19e-65Trihelix family protein