PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g25040.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 206aa    MW: 23739.2 Da    PI: 8.4628
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g25040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.15.5e-244997149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     k+ie +sn+qvtfskRr+g++KKA+EL++LC++++a+i+fs+  kl+ +
  Vradi07g25040.1 49 KKIEKSSNKQVTFSKRRTGLFKKASELCILCNVNIAIIVFSPAEKLFCF 97
                     68*******************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-3241100IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.70741101IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.37E-2842114IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-214363IPR002100Transcription factor, MADS-box
PfamPF003191.3E-235097IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-216378IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-217899IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MHESSEAKYS LGMENPSFPL GMNNHSFSSD IDAFKQQKKK AGRKKIEIKK IEKSSNKQVT  60
FSKRRTGLFK KASELCILCN VNIAIIVFSP AEKLFCFGHP DFDGIVESYL KGSKVFDPPE  120
SRERSSVSYE ECNKQYEEAM KNLELEKKNL RETETLVNKG CNRRWWEDPI DQMSQSELEQ  180
FMVSVYELRR KLAERGGELL MQSMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A3e-1842127183Myocyte-specific enhancer factor 2A
3kov_B3e-1842127183Myocyte-specific enhancer factor 2A
3kov_I3e-1842127183Myocyte-specific enhancer factor 2A
3kov_J3e-1842127183Myocyte-specific enhancer factor 2A
3p57_A3e-1842127183Myocyte-specific enhancer factor 2A
3p57_B3e-1842127183Myocyte-specific enhancer factor 2A
3p57_C3e-1842127183Myocyte-specific enhancer factor 2A
3p57_D3e-1842127183Myocyte-specific enhancer factor 2A
3p57_I3e-1842127183Myocyte-specific enhancer factor 2A
3p57_J3e-1842127183Myocyte-specific enhancer factor 2A
5f28_A3e-1842127284MEF2C
5f28_B3e-1842127284MEF2C
5f28_C3e-1842127284MEF2C
5f28_D3e-1842127284MEF2C
6c9l_A4e-1842127284Myocyte-specific enhancer factor 2B
6c9l_B4e-1842127284Myocyte-specific enhancer factor 2B
6c9l_C4e-1842127284Myocyte-specific enhancer factor 2B
6c9l_D4e-1842127284Myocyte-specific enhancer factor 2B
6c9l_E4e-1842127284Myocyte-specific enhancer factor 2B
6c9l_F4e-1842127284Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g25040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506740.11e-141agamous-like MADS-box protein AGL62
TrEMBLA0A1S3UL671e-140A0A1S3UL67_VIGRR; agamous-like MADS-box protein AGL62
STRINGXP_007154305.17e-96(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-27AGAMOUS-like 62