PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g23970.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 331aa    MW: 36282.9 Da    PI: 7.7749
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g23970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.98.6e-28157214359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg++WrKYGqK  kg+++pr+YYrC +  +Cpv+k+v+r+a d++vv++tYeg+Hnh+
  Vradi07g23970.1 157 DGCQWRKYGQKISKGNPCPRAYYRCNMGtSCPVRKQVQRCAADESVVITTYEGTHNHS 214
                      9**************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-30140216IPR003657WRKY domain
PROSITE profilePS5081128.656150216IPR003657WRKY domain
SuperFamilySSF1182905.75E-26151216IPR003657WRKY domain
SMARTSM007742.5E-31155215IPR003657WRKY domain
PfamPF031067.3E-25157213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEDKVAFKNF LQDQKKACVS STDALNWTRE PSIRNTLGST LLGLSLNNLE IPQNLEQDPL  60
NQVVELEEVK KENQNLRSML HEISEHYAAL QNQLLLVMQQ KKLSSSPPNH EDMQASKMNN  120
QVTPEEAKIV EDQAFEASCK KARVSVRALS SESLKGDGCQ WRKYGQKISK GNPCPRAYYR  180
CNMGTSCPVR KQVQRCAADE SVVITTYEGT HNHSLPPPAR SIASTTSAAL TMFLSGSTTS  240
SASTFYPSAS SCPTVTLDLT QPTKNYLKFP LSLNAYPHNY EGLPSDKHLS LVHLLSAAIT  300
RDPSLRAALE AAVSSMIADS QNINNHGPSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-20146216877Probable WRKY transcription factor 4
2lex_A2e-20146216877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g23970.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-101AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433352.10.0PREDICTED: probable WRKY transcription factor 47 isoform X1
TrEMBLA0A0S3R9090.0A0A0S3R909_PHAAN; Uncharacterized protein
STRINGXP_007154503.11e-178(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139451122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.18e-50WRKY family protein