PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g22620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 27238.1 Da PI: 5.448 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.8 | 4.5e-14 | 53 | 96 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A+eYI++L+ Vradi07g22620.1 53 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIEYIQHLH 96 57*********************66......*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.46E-18 | 46 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.494 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.25E-13 | 49 | 100 | No hit | No description |
SMART | SM00353 | 1.8E-15 | 52 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-17 | 52 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-11 | 53 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDNMGGEYNH FWDTFFQNQE LDSWAMDEAA MSGYYDSSSP DGGASSMASK NIVSERNRRK 60 KLNERLFALR AVVPNISKMD KASIIKDAIE YIQHLHEQEK RIEAEILDLE SGKLKNPTYE 120 FEHDLPILLR SKKKRTEQLF DSATSRNSPI EVIELRVAYM GDKTFVVSLT CSKRIDTMVK 180 LCEVFESLKL KIIAANITSF SGTLLKTVFI EADEQEKDVL QIKIQTAISA LNGPQSPMSI 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 9e-14 | 51 | 111 | 9 | 69 | Transcription factor MYC2 |
5gnj_B | 9e-14 | 51 | 111 | 9 | 69 | Transcription factor MYC2 |
5gnj_E | 9e-14 | 51 | 111 | 9 | 69 | Transcription factor MYC2 |
5gnj_F | 9e-14 | 51 | 111 | 9 | 69 | Transcription factor MYC2 |
5gnj_G | 9e-14 | 51 | 111 | 9 | 69 | Transcription factor MYC2 |
5gnj_I | 9e-14 | 51 | 111 | 9 | 69 | Transcription factor MYC2 |
5gnj_M | 9e-14 | 51 | 111 | 9 | 69 | Transcription factor MYC2 |
5gnj_N | 9e-14 | 51 | 111 | 9 | 69 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g22620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093213 | 0.0 | BT093213.1 Soybean clone JCVI-FLGm-17A23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014507788.1 | 1e-179 | transcription factor bHLH35 | ||||
Swissprot | Q2HIV9 | 1e-89 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A1S3UNY9 | 1e-178 | A0A1S3UNY9_VIGRR; transcription factor bHLH35 | ||||
STRING | XP_007154705.1 | 1e-138 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 5e-79 | bHLH family protein |