PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g17780.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 356aa    MW: 39374.3 Da    PI: 9.3263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g17780.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-1452103255
                      HHHHHHHHHHHHHHHHHH..HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsa..feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++  f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  Vradi07g17780.1  52 RSKHSATEQRRRSKINDRhvFQMLRELIPHS----DQKRDKASFLLEVIEYIHFLQ 103
                      889**************9779*********9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.5E-2247125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-1648123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-1352107No hitNo description
PfamPF000104.7E-1252103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.12252102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-956108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEMMKSARDS AQDEVLENEE TFFLKKEPSN NQRELRVKVD GKSTDQKPNT PRSKHSATEQ  60
RRRSKINDRH VFQMLRELIP HSDQKRDKAS FLLEVIEYIH FLQEKVHKYE GSFQGWSNEQ  120
EKLMPWQRNN DKPAENFQHR GTDNGSSPSP VLLFSSKNEE KNISISPTIP GSTQNVESGF  180
STATTSKTMD HQAGIVNKAF PIPISSQLNF FPPAQMGGPG GVVSQIAHIP VSDAENKYQP  240
SVECQTMAAT SEKLKEKELA IEGGAISISS VYSKGLLHTL THALQSSGVD LSQASISVQI  300
ELGKQANIRP TVPVSVCGAK DGEVPSNNNQ KMMRSRVASS GKSDQAIKKL KICRN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g17780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510505.10.0transcription factor BIM1 isoform X1
TrEMBLA0A1S3UWT10.0A0A1S3UWT1_VIGRR; transcription factor BIM1 isoform X1
STRINGXP_007155200.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.12e-67bHLH family protein