PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi07g17110.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

M-type_MADS

Protein Properties

Length: 273aa MW: 30646.6 Da PI: 8.4538

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi07g17110.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.4	7.6e-23	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e+ snr+vt+skR+ gilKKA+ELS+LCd+++++++fs+tgk Vradi07g17110.1 10 KLESISNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGK 53 67899*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.983	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.0E-28	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.88E-24	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.36E-24	2	84	No hit	No description
PRINTS	PR00404	6.8E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-19	12	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MGRVKLKIKK LESISNRHVT YSKRKSGILK KAKELSILCD IDILLLMFSP TGKPTLLQGE 60 RSNIEEVVAK FAQLSPQERA KRKMESLEAL KKTFKKLDHD VKIQDFLGSS SQTVEELSHQ 120 VRVLQAQLTE VHQRLSYWFN CAYSDNTNRE AECSTDISLP SYSNYIGSNK LEVGSSPQVT 180 LGQGGGAMNE LNGTTYLNVQ RCDQFTFPPQ DIEEAKHLPT LNNKSNTVDY QVNNFDLSGS 240 LFENGHQFWN SASGSCGIAM YNENGYHRTI RV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	4e-14	1	92	1	90	MEF2 CHIMERA
6byy_B	4e-14	1	92	1	90	MEF2 CHIMERA
6byy_C	4e-14	1	92	1	90	MEF2 CHIMERA
6byy_D	4e-14	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi07g17110.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014506628.2	2e-92	LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL65
Swissprot	Q7X9I0	2e-68	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A371HCH4	1e-144	A0A371HCH4_MUCPR; Agamous-like MADS-box protein AGL65 (Fragment)
STRING	XP_007155298.1	1e-86	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	3e-60	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]