PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g15540.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 475aa    MW: 52126.9 Da    PI: 6.1883
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g15540.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.60.000123684001754
                      HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++   L++l+ +      +K + a++L +A+eYIk L
  Vradi07g15540.1 368 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 400
                      55666677777776.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.668351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-8361411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.37E-5361404No hitNo description
SuperFamilySSF474593.53E-11361417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MAEEFQARIC GENWWSSSID SARSVFPVSS SPIASSPCSV AAHNDAGIYS TRQTDLKATK  60
CCVEETNNLL SNTYLGFSDA HKSPKTESAR GSDSLLIDST LQMMGFGLAS STSDNWNQHL  120
LVRCNGRAES NFDSKLREET GIDSSNSQIR RDWNPKSFSC TGGGDQQIDN FKPLNQEFSV  180
DYQNLCSITR NGLSSNRDFA IGSSTYGNPS TLRSLYEPDP DPQLPQHSLF TNRSMSYSSK  240
ASYGTPCTEL TPTWSKVTTF LKPTTIAKQH PIGLHFSNNT TFWTASADAL HDIRAGTFAS  300
SQSQYQSPTF DQEKPNCPST LLNKLNSEET LDSATMAKKD ACEPALKRPR IETPSPLPTF  360
KVRKEKLGDR VTALQQLVSP FGKTDTASVL HEAIEYIKFL HDQVNVLSTS YMKNGAPIQP  420
QQVCDDLKES EGAHEDLKSR GLCLVPISST FPVATETSSS AELWTPTFRG ALLR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g15540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507195.10.0transcription factor bHLH112
TrEMBLA0A1S3UMH40.0A0A1S3UMH4_VIGRR; transcription factor bHLH112
STRINGGLYMA07G30745.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.16e-54bHLH family protein