PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g12530.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 259aa MW: 28794.4 Da PI: 9.4876 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00062 | 156 | 178 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ Cgk F+++ L +H + Vradi07g12530.1 156 YLCHTCGKAFRSSRALGSHKTIC 178 66*****************8774 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.9E-4 | 156 | 177 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 65 | 156 | 176 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.0033 | 156 | 175 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.31E-7 | 156 | 219 | No hit | No description |
PROSITE profile | PS50157 | 9.099 | 156 | 177 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.3E-12 | 196 | 220 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 197 | 219 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.598 | 197 | 219 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 199 | 219 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MKAHLASLPL PPKPQTLTHS SSFTYSSSSD SQQHHLKEQD SLSYALRENP KKTFRVTDPE 60 DRESETESKN PTRQRSKRNR KSAMLKLSFV VSTPLITEPE PVSSVSDTSP EEDVAMSLMM 120 LSRDTWNVVT NAGPPQRSKR RCTGSETKLK KLRGKYLCHT CGKAFRSSRA LGSHKTICCR 180 QVEAQNQNND NNSIKVFECP FCYKVFGSGQ ALGGHKRSHL IPSSSSTVND SLKFKQTFID 240 LNMPAQPEED DLSVVSDA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 77 | RQRSKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g12530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014507870.1 | 0.0 | zinc finger protein ZAT4 | ||||
TrEMBL | A0A1S3UPF0 | 0.0 | A0A1S3UPF0_VIGRR; zinc finger protein ZAT4 | ||||
STRING | XP_007155662.1 | 1e-160 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 3e-37 | C2H2-like zinc finger protein |