PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g10580.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 260aa    MW: 28765.9 Da    PI: 8.9042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g10580.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.5e-08158198954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Vradi07g10580.1 158 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 198
                      699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.294149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-14150211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.10E-11151203No hitNo description
SuperFamilySSF474591.57E-14153209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-14155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-6159198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:2000012Biological Processregulation of auxin polar transport
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDVDIVKASA CDTTNMDVMA MMMQMEKFSE FCDPFYTTTP PYTEADMLSS GSSSTSVSTI  60
FNNGTPPTLV DPPPPNVLNF SNNDNTYIQQ PMTPSLHPPQ PSTTSFPHPS EKKNSMAAMR  120
EMIFRIAVMQ PIHIDPESIK PPKRRNVKIS KDPQSVAARH RRERISEKIR ILQRLVPGGT  180
KMDTASMLDE AIHYVKFLKK QVQTLEQAGA TRQHNHNTVA AVGFPIGMSN SNNVNYSSLL  240
MKGCQPCQVF GSTSKQLLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g10580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507358.10.0transcription factor HEC2
TrEMBLA0A1S3UMR80.0A0A1S3UMR8_VIGRR; transcription factor HEC2
STRINGGLYMA17G19830.13e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.14e-49bHLH family protein