PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g08280.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARR-B
Protein Properties Length: 603aa    MW: 67801 Da    PI: 4.7355
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g08280.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like63.93e-20207256151
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                      k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQ
  Vradi07g08280.1 207 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMSVPWLTRENVASHLQ 256
                      68*******************.9**************************** PP
2Response_reg821.9e-27271351109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+p+ +++l+++l+k  y ev+++  ++eal++l+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ 
  Vradi07g08280.1  27 VLVVDDDPTWLRILEKMLKKCLY-EVTTCCLATEALKKLRERKdaYDIVISDVNMPDMDGFKLLEQVGLEM-DLPVIMMSVDGETSRVMKGVQH 118
                      89*********************.***************888889**********************6644.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ ++el++
  Vradi07g08280.1 119 GACDYLLKPIRMKELRN 135
                      **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.13E-3524153IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.2E-4424159No hitNo description
SMARTSM004485.0E-3225137IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.88626141IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2427136IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.16E-3028141No hitNo description
SuperFamilySSF466892.87E-13205259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-22205256IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-19207260IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MTLLSNSMDN GCFSSPRHEA FPAGLRVLVV DDDPTWLRIL EKMLKKCLYE VTTCCLATEA  60
LKKLRERKDA YDIVISDVNM PDMDGFKLLE QVGLEMDLPV IMMSVDGETS RVMKGVQHGA  120
CDYLLKPIRM KELRNIWQHV FRKRMHEARD FESHEGFEAL HLLMNGSEQS DDGNIFAVEE  180
ITSIKKRKDA DSKHDDKEFG DHSPTKKARV VWSVDLHQKF VKAVNQIGFD KVGPKKILDL  240
MSVPWLTREN VASHLQILFS GGENNEEWSY FDKTSMFGSE KYRLYLSRLQ KENDQKSSSS  300
GIKHSDSPSK DPGSFSFLNT ASNKQQSDVV IDSFSPSDGS LLQMDAPSHE GDLKRILSEP  360
TTEKRRASPK SSQMSLNQPF SSVESSEASH AIFDCTIQTQ YSWGEFPKGP LKEEQKTTVQ  420
LEDSFSQLPL HGTRHHIQVD QSQSIASINS NPSITEEEVA PSLDTKPLYA GYKSDYVSPV  480
SSMGTAVDTF PNQSKSLILN DQSPEPIFTS NLGLKTDGFD VDCISDLDFY QRSLLLCGDA  540
ASAPLEEDLN FFLLQTEWYN MNFGQQNIDI SECYDPRLVA EAPGYFYDSA DYSSVDQSLF  600
IA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-14206256454ARR10-B
3t6k_A4e-13271337114Response regulator receiver
3t6k_B4e-13271337114Response regulator receiver
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g08280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506928.10.0two-component response regulator ARR11
TrEMBLA0A1S3ULI80.0A0A1S3ULI8_VIGRR; two-component response regulator ARR11
STRINGXP_007158728.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-109response regulator 11