PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g06300.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 380aa    MW: 42700.1 Da    PI: 8.0158
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g06300.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.11.5e-20953145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                     kr en+  rq t++kR+ngi+KKA ELS+LCd+++ +++f+++gk
  Vradi07g06300.1  9 KRLENTNGRQATYAKRKNGIMKKAAELSILCDIDIILLMFAPNGK 53
                     689****************************************97 PP
2K-box13.33.5e-061261981783
            K-box  17 lqqelakLkkeienLq.....reqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                      ++q ++ L ++ + Lq     + +R   + + +++ ++++L q+e+ L +sl++iR++K+++ + q+  lq  
  Vradi07g06300.1 126 SSQTIEDLSNQARLLQsqiseSHKRLSYWSEFDKItNVEQLGQMENSLRESLNQIRNRKENIKKHQLVSLQCN 198
                      5667777777777777666534456667999998747999*********************999999888865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-27160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.507153IPR002100Transcription factor, MADS-box
CDDcd001207.12E-24256No hitNo description
SuperFamilySSF554551.44E-23289IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-16323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-171154IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGRVKLKIKR LENTNGRQAT YAKRKNGIMK KAAELSILCD IDIILLMFAP NGKPSVCRGR  60
RSNLEEVIAK FAQLTPQERA KRKLETLEVS ISNNSVQNPY PDNMALKKTF KKLDHDVNIQ  120
EFLGTSSQTI EDLSNQARLL QSQISESHKR LSYWSEFDKI TNVEQLGQME NSLRESLNQI  180
RNRKENIKKH QLVSLQCNNQ FNEMNIPFRM SAEQHLQPLS WIANGDSQNI VLPEDSTMFL  240
HKDVEGSASS SFGSYASYLG SSMKNEMSNS AQENGVLSEL SSTANMRLQL NGQFPYLPYN  300
FNLLNNLKFQ PNAEMNPHEN PVDYHVNGSL EAPRSGFDSN HHAWASTSGP CGVTMFDDQF  360
AAAKLIQNGF GHPSIIEVA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g06300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506892.20.0agamous-like MADS-box protein AGL30
SwissprotQ1PFA41e-100AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A1S3ULL40.0A0A1S3ULL4_VIGRR; agamous-like MADS-box protein AGL30
STRINGXP_007158646.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.25e-79AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]