PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g05680.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 475aa    MW: 52310 Da    PI: 7.9606
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g05680.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.5e-30136195159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpvkk+v+r+aed ++++ tYeg+Hnh+
  Vradi07g05680.1 136 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVKKQVQRCAEDMSILISTYEGTHNHP 195
                      58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-30122197IPR003657WRKY domain
SuperFamilySSF1182901.12E-26130197IPR003657WRKY domain
PROSITE profilePS5081127.864131197IPR003657WRKY domain
SMARTSM007742.0E-35136196IPR003657WRKY domain
PfamPF031063.6E-26137195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MQDHKLEREM REVGELSLVN DSTSDEESEL VSLSLGISST RKHEKKNRTE MIREKEDLTX  60
GLSLXLDIRF DPSAIKNHST ESRCDGEMKE EELREIWPPS KVLKTMRTWD KSEASQHAEV  120
KKAXVCIRAR CDNLTMNDGC QWRKYGQKIA KGNPCPRAYY RCTVSPSCPV KKQVQRCAED  180
MSILISTYEG THNHPLPTSA TTIAYTTSAA ASMLQSPSLT TQPGLVNSDT VPLLSSNNVL  240
YNLNALNFTS SYHHVSKSPH LFFHTSSIST SNSHPTVTLD LATPQTSPHI ANFTPSLPFI  300
PKYSSTNVDF PSSTFSPLQS SVLHSPCYGD YFNYEGLITP NRNHMNTGKQ PFLGHLCRSN  360
NITNHSISKQ SLPDSIVAAS KAITATPKYQ SAILAAALTA YAGNGVRENH DEGQSAGLDL  420
NLGGDMPFTT NPVYANFNAS RYKRMSFSAP TAPKINSVIF QPSPASKSNL LLDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-201361971474WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi07g05680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506313.10.0probable WRKY transcription factor 72
TrEMBLA0A1S3UJV20.0A0A1S3UJV2_VIGRR; probable WRKY transcription factor 72
STRINGXP_007153834.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.19e-48WRKY DNA-binding protein 72