PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi07g03660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 271aa MW: 29319.4 Da PI: 7.607 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.2 | 5.3e-12 | 79 | 125 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr l+P+ +K++Ka+ L ++++ +k+L Vradi07g03660.1 79 KNHSEAERRRRERINGHLATLRGLVPST-----EKMDKATLLAEVIKQVKEL 125 58*************************8.....8************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.415 | 76 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.6E-10 | 79 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-13 | 80 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-13 | 80 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-11 | 82 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 9.4E-4 | 155 | 222 | No hit | No description |
CDD | cd04873 | 0.00148 | 160 | 227 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MVHSFYEKSS SSGSDISGLF NPTLQSVGAS SNGEVAKDGL SSAHSLVYES EKGELVKCSS 60 AARVGKNEIC EAKALAALKN HSEAERRRRE RINGHLATLR GLVPSTEKMD KATLLAEVIK 120 QVKELKKTAV EASKGFPIPM DADEVKVEPC DGLSMSYSAT ICCDFRPEII SDLRQTLDSL 180 PLHLEKAEIS TLAGRMKNVF VFTCCKENIN IDTEACQALA RTVHQALCSV LEKASASLEF 240 SPRTSHANKR RRLCFIETST SSCNHGSCSC * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 89 | ERRRRE |
2 | 248 | 252 | KRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi07g03660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014510279.1 | 0.0 | putative transcription factor bHLH107 | ||||
TrEMBL | A0A1S3UWK9 | 0.0 | A0A1S3UWK9_VIGRR; putative transcription factor bHLH107 | ||||
STRING | XP_007153714.1 | 1e-161 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8986 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 2e-34 | bHLH family protein |