PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g16580.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 294aa    MW: 33518.9 Da    PI: 4.8168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g16580.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH277.9e-09155196955
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r RR++i ++ +eL +l+P       +K++ ae+L  A +Y+k+Lq
  Vradi06g16580.1 155 ARERRRKITNKTQELSKLVPGG-----TKMNTAEMLHAAAKYVKYLQ 196
                      699*****************87.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-12143205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.398146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-11150203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-10152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-8152200No hitNo description
PfamPF000102.4E-6156196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSLSKFFDWN TLQISDSEAS LRNAAMAEEV APNIQHLFPY SDESFFLSNA LFEYCIDPND  60
GFICPSDIHS PLDPFTSFPH HQIFPTHEDY NPLPCPKRQK FFSQEQPELT TPSNHIDGFA  120
NCYSFQSEET QPQFFCMDEE KGNKERVISP QSVAARERRR KITNKTQELS KLVPGGTKMN  180
TAEMLHAAAK YVKYLQAQVE MLELMNSFEV TSRSPPFLSN IIHEDKAAPP SEILHALVVS  240
PFVQEKLYAV EKCFLPKETV TTLTNLEVVQ SRPTMVQELK QLIETESEKE KQD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g16580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503436.10.0transcription factor bHLH52-like
TrEMBLA0A1S3UBN70.0A0A1S3UBN7_VIGRR; transcription factor bHLH52-like
STRINGXP_007160660.11e-140(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-22bHLH family protein