PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi06g14720.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 170aa MW: 18651.3 Da PI: 8.416

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi06g14720.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	86.7	3.2e-27	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C++ C+l+ ++ +++q++++ +++k+FG++ ++++++++p+++r+++++sl++e++ r+ +Pv+Gavg++ +++++l++ Vradi06g14720.1 2 SCNGCRVLRKGCSETCPLRSCLqwiesAESQRHATLFLAKFFGRTDLMSFIASVPQTRRPALFQSLLFEGCGRTVNPVNGAVGLLCSGNWHLCE 95 6*******************9999777889********************************************************** PP DUF260 90 lkaelall 97 +++e++l+ Vradi06g14720.1 96 AAVETVLA 103 999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.418	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.6E-23	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCPLR SCLQWIESAE SQRHATLFLA KFFGRTDLMS FIASVPQTRR 60 PALFQSLLFE GCGRTVNPVN GAVGLLCSGN WHLCEAAVET VLAGGVLRAQ PDTVAGASTD 120 SRRPFRPLRL EHDAREINEN SSSLMNRAEE PETVRYGGHK KNQILNLFV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi06g14720.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-151	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014504286.1	1e-123	LOB domain-containing protein 39 isoform X1
Swissprot	Q9SZE8	9e-60	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A1S3UE40	1e-121	A0A1S3UE40_VIGRR; LOB domain-containing protein 39 isoform X1
STRING	GLYMA14G09750.2	1e-92	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	4e-62	LOB domain-containing protein 39