PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g12030.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 994aa    MW: 109872 Da    PI: 5.779
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g12030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-173783148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT eEd++l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Vradi06g12030.1 37 KGQWTLEEDDILRKAVEKFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                     799****************************9.************986 PP
2Myb_DNA-binding56.85.2e-1889135148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde+++++v++ G + W++ ar+++ gR +kqc++rw ++l
  Vradi06g12030.1  89 KGPWSKEEDEIIIELVNKNGAKKWSSLARHLP-GRIGKQCRERWVNHL 135
                      79******************************.************996 PP
3Myb_DNA-binding49.88.2e-16141183145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l+++++ +G++ W+  +++++ gRt++ +k++w+
  Vradi06g12030.1 141 KEAWTQEEELALIHYHQIFGNK-WAELSKYIP-GRTDNAIKNHWN 183
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.013283IPR017930Myb domain
SMARTSM007173.9E-153685IPR001005SANT/Myb domain
PfamPF002492.1E-153783IPR001005SANT/Myb domain
SuperFamilySSF466893.16E-1838103IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-223996IPR009057Homeodomain-like
CDDcd001675.20E-144083No hitNo description
PROSITE profilePS5129429.6884139IPR017930Myb domain
SuperFamilySSF466893.79E-3086182IPR009057Homeodomain-like
SMARTSM007175.6E-1788137IPR001005SANT/Myb domain
PfamPF002491.3E-1689135IPR001005SANT/Myb domain
CDDcd001673.48E-1591135No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2597142IPR009057Homeodomain-like
SMARTSM007174.2E-15140188IPR001005SANT/Myb domain
PROSITE profilePS5129420.082140190IPR017930Myb domain
PfamPF002493.2E-14141184IPR001005SANT/Myb domain
CDDcd001672.12E-11143183No hitNo description
Gene3DG3DSA:1.10.10.607.5E-22143190IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 994 aa     Download sequence    Send to blast
MDSDRSVSAP SHGQVDGTQR VKALHGRTTG PTRRSTKGQW TLEEDDILRK AVEKFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKNGAK KWSSLARHLP  120
GRIGKQCRER WVNHLDPTIK KEAWTQEEEL ALIHYHQIFG NKWAELSKYI PGRTDNAIKN  180
HWNSSVKKKL DSYLTSGVLN QFEPVLHVGN SNQSTRLQCS GDGNCSKGIE REEVSESSQG  240
SANAVCNTEL QTREATCRPN EECNLRKDHS PSQASCSEPY YVSIDDVSIC IPEISHQEVC  300
TSQFIEQQSR ELGNSITGDC HINLHSLPNV SSMVVGQDSS QLHRDCVASS EICDMVNVPF  360
RPSEALGAST SMVPASIGSL KPEHVLISDD ECCRVLFSDS INDGCFPPVD YIKGEETVKF  420
SGCTSFRCQS CNFQISETGG SSTPQLTCPR CSNNYQGTSS SLSNPPVLSA CDDREGPSVN  480
DNHLYGAHGQ QLVSTAPANL TYVNYISSSP CVDGMGTVVM EEPRDQNTNV HTEKEDSGSL  540
CYEPPRFPSL DIPFFSCDLV QSGSDMQQEF SPLGIRQFMM SSMNCLTPFK LWDSPSHGDS  600
PDALLKSAAK TFTGTPSILK KRHRDLLSPL SDKRVEKKLE TDMTTFTKNI CSLDVMFDDN  660
ETQETDIPSL QKQNSSACVD DDNKENCGQA YKPTEYGTFD EKNSHKDTVD NSQPNVKQQR  720
LRVDASAAAT EQEPSGVLVE HDVNDLTLSP DQVGLKSNRG LGTSTKTPKS MNRTLEEVPN  780
QNGHLKLSSK NPCSRINSNS PCVRAKEHEK LSVAVTRVQA PVDNSGEQTR KDGGFETCSI  840
FGGTPFRKGL ESPSAWKSPW FFNAFLSSPR LDTELTVEDF GYLMSPGDRS YDAIGLLKQI  900
SEHTAATYAN AQEILVNETP KALQKDNYQG SPNQPGNHSQ LASNALIERR TLDFSECGTP  960
SKGDDNKSSA IIVWCFIVSE YFGRVKLSKL SGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-64371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-64371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g12030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504831.10.0transcription factor MYB3R-1
TrEMBLA0A1S3UFN80.0A0A1S3UFN8_VIGRR; transcription factor MYB3R-1
STRINGXP_007161344.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein