PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g06410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 235aa MW: 25758 Da PI: 9.5152 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.2 | 1.1e-10 | 36 | 88 | 5 | 57 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l ++ Vradi06g06410.1 36 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTT 88 9*****************************************99988876655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.2E-16 | 32 | 96 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.749 | 34 | 97 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.4E-8 | 36 | 90 | No hit | No description |
SuperFamily | SSF57959 | 5.3E-11 | 36 | 87 | No hit | No description |
Pfam | PF00170 | 3.1E-9 | 36 | 92 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 1.29E-22 | 37 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MMDLSPSDPF AGGSSTATKK AMPPDKLAEL WTVDPKRAKR ILANRQSAAR SKERKARYIQ 60 ELERKVQTLQ TEATTLSAQL TLYQRDTTGL STENTELKLR LQAMEQQAQL RDALNEALKK 120 EVERLKVATG EMMSHTESFN LGMHHMPFTG STFSPILSQS GPSGHQNIQL SSFGHSPSTM 180 PTHQLHQTSS HTLSEILQND QLGRFQGLDI SSKGSTLVKS EGPSLSASES STTF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g06410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014502842.2 | 1e-154 | transcription factor RF2b | ||||
Swissprot | Q6S4P4 | 2e-77 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A1S3U9Z4 | 1e-152 | A0A1S3U9Z4_VIGRR; transcription factor RF2b | ||||
STRING | XP_007142045.1 | 1e-148 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1548 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06850.1 | 5e-83 | basic leucine-zipper 52 |
Publications ? help Back to Top | |||
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