PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g02270.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 326aa    MW: 37068.8 Da    PI: 7.9158
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g02270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1062e-33175232259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp++v++tYeg+Hnh+
  Vradi06g02270.1 175 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCSVKKRVERSFQDPSIVITTYEGQHNHH 232
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-35159234IPR003657WRKY domain
SuperFamilySSF1182904.18E-29167234IPR003657WRKY domain
PROSITE profilePS5081132.179169234IPR003657WRKY domain
SMARTSM007745.6E-39174233IPR003657WRKY domain
PfamPF031062.3E-26175232IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MANEKDRFYD PFHYNHHEHQ LNHSSNFPFF RDNNSAPIAS QNFQGFPSHQ RTTFTDCLHG  60
SMDYNTLSRA FDMSCSSSEV LSSIDENPKK PSAGDSAGIS GNQSTPNSSV SSSSNEAEAL  120
LEEDSTKTQK KDKQPKGCED EEEKPKKENK PKKKEKKPRE PRFAFLTKSE IDNLEDGYRW  180
RKYGQKAVKN SPYPRSYYRC TSQKCSVKKR VERSFQDPSI VITTYEGQHN HHCPATLRGS  240
AATMLSAPPF FGSSYMGSSL PQDFLAQFLP SYTQNDHQNP MFNQNLSNNL HLQPQQHQQH  300
QFQLPRDYGL LQDLLPSSFP GKQEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-271672351078Probable WRKY transcription factor 4
2lex_A9e-271672351078Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149156KPKKKEKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g02270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504721.10.0probable WRKY transcription factor 71
TrEMBLA0A1S3UFC80.0A0A1S3UFC8_VIGRR; probable WRKY transcription factor 71
STRINGXP_007141406.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-49WRKY DNA-binding protein 71