PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g05780.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 382aa    MW: 42646.4 Da    PI: 7.4143
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g05780.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.4e-107395426
                     ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                     e C ++++tG Ck+G +CkF+H+
  Vradi05g05780.1 73 EDCAYYLKTGSCKFGFNCKFNHP 95
                     89********************9 PP
2zf-CCCH21.73.4e-07101119725
                      SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   7 rffartGtCkyGdrCkFaH 25 
                      ++++r+G Ck+G  CkF+H
  Vradi05g05780.1 101 QYYLRSGGCKFGKACKFNH 119
                      59***************** PP
3zf-CCCH37.15.4e-12144167326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      +++C++++r+G Ck+G++CkF+H+
  Vradi05g05780.1 144 EKECHYYMRNGSCKFGANCKFNHP 167
                      679********************9 PP
4zf-CCCH291.8e-09277303127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C++f++tG Ck+ ++C+F+H++
  Vradi05g05780.1 277 PGEPECSYFLKTGDCKFKSNCRFHHPK 303
                      5799*********************96 PP
5zf-CCCH35.91.2e-11325349327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +  C +++r+G+Ck+G+ CkF H+p
  Vradi05g05780.1 325 QNVCTYYSRYGICKFGPACKFDHPP 349
                      568********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.41E-66898IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9576997IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-46996IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-87395IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-47594IPR000571Zinc finger, CCCH-type
SMARTSM00356699121IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4101119IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.878101122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.263141169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6142168IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-5143168IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9144167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4147166IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4276303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155276304IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-7278303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5281305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6320347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.488322350IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5322349IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9325349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4327347IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGKTLSRTLD HDPQQSDLNH VAQDDDALNR ELQNKLDLKD VSESEDKDVE GVDSRDERSS  60
GRAQQYPLRP EAEDCAYYLK TGSCKFGFNC KFNHPLKRKN QYYLRSGGCK FGKACKFNHK  120
REKCSSANPI AELNFLGLPI RVGEKECHYY MRNGSCKFGA NCKFNHPDPT AGGGDSPSRY  180
DNGSSVSLQG VSQSSISSWS STRPLNESTP FVPMILSANP GVSPQSSEWD GYQAPVYLPE  240
RNMHLPSTYV MNNPVMETNV YMHHQQQVQV EEFPERPGEP ECSYFLKTGD CKFKSNCRFH  300
HPKNRITRLP PCSLSNKGLP LRPDQNVCTY YSRYGICKFG PACKFDHPPP STMNGLDQQS  360
SYSNSASVDV SENGGVSDGN Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g05780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-141AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014498626.10.0zinc finger CCCH domain-containing protein 43
SwissprotQ9STM41e-127C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A1S3TXX90.0A0A1S3TXX9_VIGRR; zinc finger CCCH domain-containing protein 43
STRINGXP_007137964.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-119C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]