PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g05060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bZIP | ||||||||
Protein Properties | Length: 289aa MW: 32103.8 Da PI: 5.7859 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.9 | 5.8e-10 | 94 | 151 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r NR +A rs +RK ++ eLe+k+++L++e ++L +l+ + l se Vradi05g05060.1 94 KRAKRILANRQSAARSKERKACYVSELERKFQSLQTEATTLSAQLSLFQRDTTGLSSE 151 9*****************************************9999887776666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.2E-15 | 90 | 154 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.3 | 92 | 155 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.91E-10 | 94 | 148 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.4E-10 | 94 | 149 | No hit | No description |
Pfam | PF00170 | 6.0E-9 | 94 | 152 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 2.91E-21 | 95 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MSFPHHRRTQ SEMHFRITDD FDLEVDLSPP HFQDPTPPNQ SGPKPESPPH ETACSGHRRS 60 NSADTSSSSL LEGIEAKKAL SPDKLAELWT VDPKRAKRIL ANRQSAARSK ERKACYVSEL 120 ERKFQSLQTE ATTLSAQLSL FQRDTTGLSS ENTELKLRLQ AMEQQAKLCD ALNEALKKEV 180 DRLRIATGEI AMPADNYGLG MHQLTYSQGP FFSHQSQHGQ SAFQATQMPQ MHSLSSNVAT 240 SNEPLFDLDI PYDMSEMLSN ESIGQFQGLD IGNGVSQVLM PDYSSNFC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g05060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014500180.1 | 0.0 | bZIP transcription factor 18 | ||||
Swissprot | O22873 | 2e-75 | BZP18_ARATH; bZIP transcription factor 18 | ||||
TrEMBL | A0A1S3U2D5 | 0.0 | A0A1S3U2D5_VIGRR; bZIP transcription factor 18 | ||||
STRING | XP_007137632.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1548 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 3e-75 | bZIP family protein |
Publications ? help Back to Top | |||
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