PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g03010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 299aa MW: 33360.1 Da PI: 4.8269 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35.8 | 2.1e-11 | 101 | 149 | 4 | 55 |
AP2 4 kGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +GV+ ++ rW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Vradi05g03010.1 101 RGVSKYRGVARWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 149 78877666678999998856...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 15.909 | 99 | 157 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-7 | 101 | 149 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-15 | 101 | 159 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-14 | 101 | 158 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.78E-21 | 104 | 159 | No hit | No description |
SMART | SM00380 | 2.3E-18 | 105 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MQPLTTTTLT PQTLSPTRSN EQEEVSPEIP LLNAAQYTEE SPGTDGQADM KLICGTRIAG 60 MSHRTRKDDK VKLFLVCFKI NYCRKQNFTF KICRKSSGFS RGVSKYRGVA RWEARIGRVF 120 GNKYLYLGTY ATQEEAATAY DMAAIEYRGL NAVTNFDLSR YIKWLKPNNN DNTANSNVLD 180 ANPNSETNFT PNSNQEQGFN FFQSQESTVT QPRSSGATSA LGLLLQSSKF KEMMEMTSAA 240 DLSTAASGSE LVPCTFPDDI QTYFECEDSN RYGEGDDNMF GELNGFVPHM FHCDDFES* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g03010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022636198.1 | 1e-139 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A3Q0EWT4 | 1e-138 | A0A3Q0EWT4_VIGRR; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
STRING | XP_007138410.1 | 1e-121 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.2 | 5e-36 | ARIA-interacting double AP2 domain protein |