PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g08650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 275aa MW: 31038.2 Da PI: 7.8268 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.8e-18 | 55 | 107 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rq+ +WFqNrRa++k Vradi04g08650.1 55 KKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWK 107 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123.5 | 9.8e-40 | 53 | 142 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekk+rl+ eqvk+LE+sFe +kLeperKv+la++Lglqprq+a+WFqnrRAR+ktkqlEk+yeaLk++++a k++n+ L++++++L++e Vradi04g08650.1 53 EKKKRLNLEQVKALEKSFELGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEALKKQFEAAKANNDVLKSQNQKLQAE 142 69*************************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-19 | 48 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.503 | 49 | 109 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-17 | 52 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.70E-16 | 54 | 110 | No hit | No description |
Pfam | PF00046 | 1.6E-15 | 55 | 107 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-19 | 57 | 117 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.4E-6 | 80 | 89 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 84 | 107 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.4E-6 | 89 | 105 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.9E-10 | 109 | 142 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MLSENWVFFL NVAGGAPPLM LKRSMSFSGI ENKCDEVNGD DELSDDGNFQ CGEKKKRLNL 60 EQVKALEKSF ELGNKLEPER KVQLAKALGL QPRQIAIWFQ NRRARWKTKQ LEKEYEALKK 120 QFEAAKANND VLKSQNQKLQ AEGNMNLITA QNLGVSVTKL LFLILIQISV VCGLQAVKSR 180 GWCENGIISL KKETEGSWSN GSDNSSNINL ELSRGPIINN ATSCQAPFPT SITQIFQYSS 240 KPDFHEDDFC NVIHNIAEQQ NFWPWPGQQN HHFH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 109 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g08650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022635709.1 | 1e-172 | homeobox-leucine zipper protein ATHB-23 isoform X1 | ||||
Swissprot | Q8LC03 | 1e-59 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A3Q0EZC0 | 1e-171 | A0A3Q0EZC0_VIGRR; homeobox-leucine zipper protein ATHB-23 isoform X1 | ||||
STRING | XP_007139587.1 | 1e-148 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 1e-55 | homeobox 3 |
Publications ? help Back to Top | |||
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