PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g08580.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 527aa    MW: 57647.6 Da    PI: 7.7811
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g08580.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.6e-30188247159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+++d +++++tYeg+Hnh+
  Vradi04g08580.1 188 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApTCPVRKQVQRCSQDLSILITTYEGSHNHP 247
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-31174249IPR003657WRKY domain
SuperFamilySSF1182907.85E-27181249IPR003657WRKY domain
PROSITE profilePS5081128.495183249IPR003657WRKY domain
SMARTSM007748.8E-36188248IPR003657WRKY domain
PfamPF031061.8E-26189247IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MSSPSNPPEI EEKRVTQEDK VKSAKTEMGE VKEENERLKK TLERVEKDYQ SLQLRFFDIL  60
HKDVPKKGFV TSHEDQSEEP EFVSLCLGRS PTEPKKEARI GDFDKPTEDN VGPNLTLGLD  120
SKHMLEMEMV SDLSPRNSSE EPKETETEGT LSTNQSAKVI NVNTDISDQM PAKRARVSVR  180
ARCDTPTMND GCQWRKYGQK IAKGNPCPRA YYRCTVAPTC PVRKQVQRCS QDLSILITTY  240
EGSHNHPLPV SATAMASTTS AAASMLLSGS STSSSHISAS FGNGLSFNDQ LSRAKQIFSP  300
PNHASPHMFS TITLDLTSSA PSSSSTQFHR GLTSTMAPVS NPRSSASLSF CSPDHNFIPS  360
IWGKGFHDNA TTTTAIDKVP TRTIMHPNNL QQHFYQQCTK NETPSRDALA ETITKAISTD  420
PSFRSVIAAA VSSIVERGSN GDKQQVTENV LGSGLNLKLG EHLQLASPSP LNQNGKGCLT  480
GYLKSLASKS SEAGNFILLQ PPLPFSFSKN VTNQINRYVP EMNTHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20175249174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g08580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497566.10.0probable WRKY transcription factor 72
TrEMBLA0A1S3TUU90.0A0A1S3TUU9_VIGRR; probable WRKY transcription factor 72
STRINGXP_007139595.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.17e-78WRKY DNA-binding protein 72