PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0456s00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LFY | ||||||||
Protein Properties | Length: 333aa MW: 37224.3 Da PI: 8.315 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 192.8 | 2.6e-59 | 1 | 168 | 1 | 159 |
FLO_LFY 1 mdpeafsaslfkwdpraaa.....aapparlleeaavseapleaaaa..aaarklreleelfkayGvryltvakiaelGftvstLvdmkdee 85 mdp+af+aslfkwdpr++ + pp ll a++++a +++ + aa r+l +leelf+ayG+ry+t+akiaelGftvstLvdmkdee Vradi0456s00020.1 1 MDPDAFTASLFKWDPRTVLpaappSRPPPPLLDYAVAPPAVAQSYHParAAPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDEE 92 9**************99986443322334454444444443333333003334477************************************ PP FLO_LFY 86 lddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeet..aldalsqeglseepvqeeke 159 ldd+m+sls+ifr+dllvGeryGikaavraerrr++ee+ +++ +lls+d++t aldalsqeg+ p++++ Vradi0456s00020.1 93 LDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRIDEEDIKRRTGNLLSTDTTTtnALDALSQEGTPSRPSRRTAV 168 ***************************************999999999998876669********98877766444 PP | |||||||
2 | FLO_LFY | 247.6 | 5.8e-76 | 212 | 318 | 280 | 386 |
FLO_LFY 280 kvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvP 371 +vtnqvfryakkagasyinkPkmrhYvhCYalhcLdee sn+lrrafkergenvGawrqacykplvaiaarqgwdida+fnahprLsiWYvP Vradi0456s00020.1 212 QVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVP 303 7******************************************************************************************* PP FLO_LFY 372 tkLrqLChlerskas 386 tkLrqLCh+er++a+ Vradi0456s00020.1 304 TKLRQLCHAERNTAA 318 ***********9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 3.1E-63 | 1 | 165 | IPR002910 | Floricaula/leafy protein |
Pfam | PF01698 | 2.4E-74 | 212 | 317 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MDPDAFTASL FKWDPRTVLP AAPPSRPPPP LLDYAVAPPA VAQSYHPARA APRELGGLEE 60 LFQAYGIRYY TAAKIAELGF TVSTLVDMKD EELDDMMNSL SQIFRWDLLV GERYGIKAAV 120 RAERRRIDEE DIKRRTGNLL STDTTTTNAL DALSQEGTPS RPSRRTAVKN APPRYSCHES 180 CITHSLTQPC LCSDHSDSAT HLRCLELYMG MQVTNQVFRY AKKAGASYIN KPKMRHYVHC 240 YALHCLDEEV SNELRRAFKE RGENVGAWRQ ACYKPLVAIA ARQGWDIDAI FNAHPRLSIW 300 YVPTKLRQLC HAERNTAAAS SSVSVGSAHL PF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 2e-67 | 212 | 327 | 58 | 173 | PROTEIN LEAFY |
2vy2_A | 2e-67 | 212 | 327 | 58 | 173 | PROTEIN LEAFY |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0456s00020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014630701.1 | 1e-161 | protein UNIFOLIATA-like | ||||
Swissprot | O04064 | 1e-132 | FLLH_POPTR; Floricaula/leafy homolog | ||||
TrEMBL | A0A0R0KH09 | 1e-159 | A0A0R0KH09_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA04G37900.2 | 1e-161 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8033 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 2e-66 | floral meristem identity control protein LEAFY (LFY) |
Publications ? help Back to Top | |||
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