PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi03g03820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 245aa MW: 26610.5 Da PI: 7.0695 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0012 | 62 | 84 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Vradi03g03820.1 62 YECKTCNRCFPSFQALGGHRASH 84 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 14.1 | 0.00014 | 149 | 171 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Vradi03g03820.1 149 HECSICGAEFSSGQALGGHMRRH 171 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 6.7E-11 | 61 | 85 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.9E-9 | 61 | 84 | No hit | No description |
SMART | SM00355 | 0.14 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.265 | 62 | 84 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.9E-9 | 144 | 171 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.6E-4 | 147 | 171 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.01 | 149 | 171 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.743 | 149 | 171 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.4E-12 | 149 | 172 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 151 | 171 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSTCSTAGRS STDNSAAFEP PTTSNELRNE EDEDLANCLI LLARGHTTPK PSHGKESGLY 60 VYECKTCNRC FPSFQALGGH RASHKRFSKA GAEEKQGLVT TFGDNSSKNY HDDYCVPTST 120 TLTLQLSTVL YNSSNSTRSS TVNAKSKIHE CSICGAEFSS GQALGGHMRR HRNFLSSPSS 180 GAIAYAGDGI PEIPEIKKQK DVLNLDLNLP APEDDHHRES NLFPFKSKEK VIVFSATSLV 240 DCHY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi03g03820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014495612.1 | 0.0 | zinc finger protein ZAT11 | ||||
TrEMBL | A0A1S3TPG0 | 0.0 | A0A1S3TPG0_VIGRR; zinc finger protein ZAT11 | ||||
STRING | XP_007162794.1 | 1e-149 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 5e-50 | C2H2 family protein |