PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0319s00050.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 223aa    MW: 23671.4 Da    PI: 6.8984
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0319s00050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.91.1e-3041135194
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkC  +C++ap+f  +q ++kfa+vhk+FGasnv+kll+++p ++r++a++++ yeA+ar++dPv +  + +  lq q++++k
  Vradi0319s00050.1  41 PCGACKFLRRKCIGGCIFAPHFGTDQgAAKFAAVHKVFGASNVSKLLSNIPANRRQEAATTISYEAQARLSDPVASLQAELGMLQTQVMNSK 132
                        7***********************9989************************************************************9988 PP

             DUF260  92 ael 94 
                           
  Vradi0319s00050.1 133 FAY 135
                        554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.140142IPR004883Lateral organ boundaries, LOB
PfamPF031958.3E-3041132IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGNDGDDSGG SGSKRKGPVL RRAMATQTQD EAMVGSSPAT PCGACKFLRR KCIGGCIFAP  60
HFGTDQGAAK FAAVHKVFGA SNVSKLLSNI PANRRQEAAT TISYEAQARL SDPVASLQAE  120
LGMLQTQVMN SKFAYASALQ TTQLQQANMN AAALQPSYSN NSCASTNLMN LSSFNNNPAA  180
FDLAMDTAPS SNTLEPLQLT RLSKCEEEDE EESRTQQAFN HH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-30411281197LOB family transfactor Ramosa2.1
5ly0_B9e-30411281197LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0319s00050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-170AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524233.11e-144LOB domain-containing protein 20
SwissprotQ9SRV33e-55LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A0L9VM831e-144A0A0L9VM83_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T9I81e-144A0A0S3T9I8_PHAAN; Uncharacterized protein
STRINGXP_007151760.11e-130(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.17e-54LOB domain-containing protein 20