PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0310s00020.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 456aa    MW: 50370.6 Da    PI: 6.8044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0310s00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.6e-063463841154
                        HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Vradi0310s00020.1 346 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 384
                        5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.589335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-11345399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.28E-7345388No hitNo description
SMARTSM003530.0025346390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-10349393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MADDQFQASG NWWDTARNVR YESGASQSSS SAITNIGNFA WQASDMADMK PRSSMDSSSV  60
VFHDSQNKLQ PPDSTTSTDP NLHMMGLGLS SQPMDWNQAS LLRGEKGTEN SFRSMLQENL  120
SSSRTNFQQE TGVELSQQVQ WRSEKMFSTE SSTNEFKQVN RGFSLDQSKF SPQYSSGDST  180
VTSQGLPSSN FQMDSSALYG TPSILQGLLG PDHNNQQQPS SFENRSMSFP YPTTYGLNSN  240
NELIPSWSKV PQFLRGSPPK QPPNNQLHFT NNAPFWNASE AANFKDVRSS FFPSLQPPFS  300
TPNFEVQSKN ISEVRESGTV GKKSGNEPAP KRTRNETPSP MPAFKVRKEK MGDRITALQQ  360
LVSPFGKTDT ASVLSEAIEY IKFLHEQVTA LSTPYMKSGA SIQIQQNSGK CKETEGPKQD  420
LRSRGLCLVP VSSTFPVTHE TTVDFWTPTF GGVSR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0310s00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014524212.10.0transcription factor bHLH123
RefseqXP_014524213.10.0transcription factor bHLH123
SwissprotQ8GXT34e-90BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A1S3W1R30.0A0A1S3W1R3_VIGRR; transcription factor bHLH123
STRINGXP_007149667.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]