PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g14400.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 291aa    MW: 33354.5 Da    PI: 6.5096
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g14400.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.1e-152370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ede+l+++    G g+W+ Iar  g+ R++k+c++rw +yl
  Vradi02g14400.1 23 KGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 70
                     678*******************************************97 PP
2Myb_DNA-binding44.53.7e-1476120147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ +E+ l+ +++  +G++ W+ Ia++++ gRt++++k++w++ 
  Vradi02g14400.1  76 RGAFSSQEQHLIFHLHSIFGNR-WSQIAARLP-GRTDNEIKNFWNST 120
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9071870IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-221873IPR009057Homeodomain-like
SuperFamilySSF466891.25E-2721117IPR009057Homeodomain-like
SMARTSM007175.8E-122272IPR001005SANT/Myb domain
PfamPF002494.9E-142370IPR001005SANT/Myb domain
CDDcd001674.82E-102670No hitNo description
PROSITE profilePS5129423.11171125IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2474126IPR009057Homeodomain-like
SMARTSM007173.1E-1375123IPR001005SANT/Myb domain
PfamPF002496.9E-1376120IPR001005SANT/Myb domain
CDDcd001678.33E-978121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MRKPDLMANK DRMKDIIKSK LRKGLWSPDE DEKLIRYMLT NGQGCWSDIA RNAGLQRCGK  60
SCRLRWINYL RPDLKRGAFS SQEQHLIFHL HSIFGNRWSQ IAARLPGRTD NEIKNFWNST  120
LKKRMKTNTS LNNSTDSSES KDVLSGIMPF NEHDIMNMSM DSSSSISSMQ AMVLSDQFDP  180
FSLLVNNHCD MTNVSEIFTC MEDGHQVNHG TLEENNKMLP SLESRSIESD SVPIDVKSHN  240
NHFNYDSFNN TDKIQGSKVE DLFGFSNHGQ GEFYLENLMQ DITSFPFLDF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-291212516128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g14400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493577.10.0transcription factor MYB83
SwissprotQ9C6U12e-75MYB83_ARATH; Transcription factor MYB83
TrEMBLA0A1S3TII80.0A0A1S3TII8_VIGRR; transcription factor MYB83
STRINGXP_007133825.11e-167(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.12e-72myb domain protein 83
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]