PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g13360.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 415aa    MW: 45802.1 Da    PI: 6.5221
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g13360.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.14e-28302352151
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                      k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQ
  Vradi02g13360.1 302 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQ 352
                      68************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.487299359IPR017930Myb domain
SuperFamilySSF466891.16E-12299353IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-23300352IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-23302352IPR006447Myb domain, plants
PfamPF002491.3E-5304353IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MRTVTHNQTA AAVFPASRRW SEVGDEMEGV RNGCDEMGGF CHEHFLLNSF CHSLSLITRE  60
KMASQAELSM EYKPYTYSTL LKSFADQTDQ TYKLEDFLSR LEEERLKIDA FKRELPLCMQ  120
LLTNAVDASR QQLQTFRSNQ GTRPILEEFI PIKHPNSQES TEKASNISDK ASWMTSAQLW  180
SQASEGTKPK STITSPKKSA DTGFSVSPRL ALDSKRRNGG AFLPFSKERN ACQGMGDLPE  240
LGLASSESEM EVKKCEETEK CSKRENSGKA GSFEGIVDQG KIAAIATEAQ TTNTTTTTTG  300
RKARRCWSPD LHRRFVNALQ MLGGSQVATP KQIRELMKVD GLTNDEVKSH LQTAPHTQSS  360
PESDVRSGGD RSESIEDGKS ESGSWKGNGE KKGLAALRDQ EGEDSTGSEI TLRF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi02g13360.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493481.10.0myb family transcription factor EFM
SwissprotQ9ZQ851e-89EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A1S3TI950.0A0A1S3TI95_VIGRR; myb family transcription factor EFM
STRINGXP_007138330.11e-180(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-86G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]