PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi02g08980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 317aa MW: 35016.5 Da PI: 9.5385 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00028 | 83 | 105 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F+ ++ + H + H Vradi02g08980.1 83 TCHKCGEQFNKWDAAEAHHLSkH 105 7*****************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 84 | 105 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 2.3E-22 | 107 | 315 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 8.1E-8 | 112 | 292 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MPTVWFSLKK SLHCKSEPSD VHDPKTRKHL STILTKRAGR TSSTPPRKSP FLLSDKEGSG 60 PPGLQPSTRL SLETDSNGSS TVTCHKCGEQ FNKWDAAEAH HLSKHAVTEL VEGDSSRKIV 120 EIICRTSWLK SENQCGRIER VLKVHNMQKT LARFEEYREM VKIKASKLQK KHPRCLADGN 180 ELLRFYGTTV ACSLGLNGSS SLCLSEKCCV CRIIRNGFSA KKELKGGIGV FTTSTSGRAF 240 ESIEIFGDEP SLRKALIVCR VIAGRVHRPL ENIQEMAAQT GFDSLAGKVG LYSNIEELYL 300 LNPRALLPCF VVICKP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi02g08980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. | |||
GenBank | BT094366 | 0.0 | BT094366.1 Soybean clone JCVI-FLGm-24D22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014494539.1 | 0.0 | uncharacterized protein LOC106756578 | ||||
Refseq | XP_017433925.1 | 0.0 | PREDICTED: uncharacterized protein LOC108340834 | ||||
TrEMBL | A0A0L9V4K0 | 0.0 | A0A0L9V4K0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SAI6 | 0.0 | A0A0S3SAI6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3TL86 | 0.0 | A0A1S3TL86_VIGRR; uncharacterized protein LOC106756578 | ||||
STRING | XP_007132990.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4983 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27240.1 | 1e-131 | C2H2 family protein |