PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0227s00040.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 117aa    MW: 12541.2 Da    PI: 4.5027
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0227s00040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26057.83.1e-1845747100
             DUF260  47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                        k+lpe +r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e
  Vradi0227s00040.1   4 KELPEYQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAE 57 
                        578999*******************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.176158IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-16455IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MTDKELPEYQ RSDAVSSMVY EANARVRDPV YGCVGAISSL QQQVDVLQTQ LALAQAEVVH  60
MKLSQVSTSS EQLKAVPATS NSSSENLSPS SKLAKTLFAM DMVVDQPNMG VSLWSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-1957658129LOB family transfactor Ramosa2.1
5ly0_B8e-1957658129LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0227s00040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-180AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490538.12e-75LOB domain-containing protein 4
RefseqXP_017406211.12e-75PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE97e-28LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A0L9T7V06e-74A0A0L9T7V0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SAJ96e-74A0A0S3SAJ9_PHAAN; Uncharacterized protein
TrEMBLA0A1S3T9U56e-74A0A1S3T9U5_VIGRR; LOB domain-containing protein 4
STRINGXP_007133379.11e-57(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.12e-20LOB domain-containing protein 4