PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0223s00280.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 448aa    MW: 50974.4 Da    PI: 7.1933
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0223s00280.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.1e-18186232148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g WT +Ed ll+++v q+G + W+ Ia+ ++ gR +kqc++rw+++l
  Vradi0223s00280.1 186 KGQWTSDEDRLLIQLVDQYGVRKWSHIAQALP-GRIGKQCRERWHNHL 232
                        799*****************************.*************97 PP
2Myb_DNA-binding58.21.9e-18240280345
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         WT+eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+
  Vradi0223s00280.1 240 IWTEEEDKILIQAHAEIGNK-WAEIAKKLP-GRTENSIKNHWN 280
                        6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.627181236IPR017930Myb domain
SuperFamilySSF466897.4E-32183279IPR009057Homeodomain-like
SMARTSM007171.9E-16185234IPR001005SANT/Myb domain
PfamPF002491.6E-16186232IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-27187238IPR009057Homeodomain-like
CDDcd001674.00E-15189232No hitNo description
PROSITE profilePS5129421.475237287IPR017930Myb domain
SMARTSM007172.9E-17237285IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-22239285IPR009057Homeodomain-like
CDDcd001674.09E-14241283No hitNo description
PfamPF002496.9E-17241280IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDIQGNLTEN YASQPMHVQE NCLKPSMGDQ LPFGVPSSQG FLQDFHHIHH FPVNDGSSSN  60
PIFGVHTPFD HNVNCESAPP DFEVFECKPF AESNGSAHAH LMHNFQYVGY SLNLPRTNQL  120
DMVVANQRFL PFSALETKPL NFVAPDEISC ITPPNFYKKV GLNKNLRESP STRRTFKARK  180
KSNIVKGQWT SDEDRLLIQL VDQYGVRKWS HIAQALPGRI GKQCRERWHN HLRPDIKKDI  240
WTEEEDKILI QAHAEIGNKW AEIAKKLPGR TENSIKNHWN ATKRRQYSKR KCRSKYPRGS  300
LLQEYIKSLN LDQNPPMDYR KKSVKNANAK TNNNGKAAAE LLCGDQFCSN GQLVTKYDFN  360
EVPEFCLDDN LFEEGCSIDS LLDDIQSGST MDDKDFDGKV ECAPTVEGKK SHHHHTEMMA  420
PTMAIEVKKE LDLVEMMSHH VNESSNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-451842862104C-Myb DNA-Binding Domain
1msf_C1e-451842862104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0223s00280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490560.10.0transcription factor MYB98-like
SwissprotQ9S7L27e-93MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A1S3T9W60.0A0A1S3T9W6_VIGRR; transcription factor MYB98-like
STRINGXP_007155438.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.17e-92myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]