PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0189s00090.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 612aa    MW: 67460.7 Da    PI: 6.5561
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0189s00090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.71.8e-17354400455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRRdriN+++  L++l+P++      K +Ka++Le+A+eY+ksLq
  Vradi0189s00090.1 354 VHNLSERRRRDRINEKMKALQQLIPHS-----SKTDKASMLEEAIEYLKSLQ 400
                        6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.47350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-20353428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.93E-16353398No hitNo description
PfamPF000105.8E-15354400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-19354408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-18356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MDNSVPDWNF GSDSCITNNE KKPIGVDQEL VELLWQNGQV VLHSQTHRKP GVNSITPRPL  60
HRAFQSTLRT SEPFGNSSNL IQDDETVSWI QYPLEDPLEQ EFCSNLLSEL PQCDVESYKQ  120
IKPFEEAKFT KLDASGAPHV LVSSQSPTMK SSSFQELSGI PIPAPRFHVS DSPQKNNNDL  180
GGGPCKVQNF SHFSPTLNVS SALPNGRFRD KITGNMSKNE VRECSLMTVG SSYCGSNHMT  240
QDPDASRASS NGVWTTALSV DPEAVRDDVP RTIPLCEKGK SEMLEPTATS SSGGSGSSLG  300
KTCSLSTRNQ SQKRKTIDVE ESEDHSEDTE LKSPVGNKTS QRTGSARRNR AAEVHNLSER  360
RRRDRINEKM KALQQLIPHS SKTDKASMLE EAIEYLKSLQ LQLQLMWMGS GMAPMMFPGI  420
QHYMSQMGMG MATSPFPPIQ NPMQLPRVPL DHPVSSSQTP NQTLMCQNPI LGAFNYQNQM  480
QNPALSEQYA RYMGYHLMQN ASQPINVFRY GPQAVQHSQT MITPSNSSGN MSGAANIDET  540
VSGKMGFALD GGINPDKAPN LCSVLAMQFV LSNEEFEKIC SRQVLHYGPV LFSASVSHQV  600
EHSALFVDLR K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358363ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0189s00090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522269.10.0transcription factor PIF4 isoform X1
RefseqXP_014522270.10.0transcription factor PIF4 isoform X1
RefseqXP_014522271.10.0transcription factor PIF4 isoform X1
RefseqXP_014522272.10.0transcription factor PIF4 isoform X2
TrEMBLA0A1S3VVD10.0A0A1S3VVD1_VIGRR; transcription factor PIF4 isoform X1
TrEMBLA0A1S3VVQ90.0A0A1S3VVQ9_VIGRR; transcription factor PIF4 isoform X2
STRINGXP_007146296.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.21e-46phytochrome interacting factor 4