PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0158s00260.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 91aa MW: 10192.9 Da PI: 10.1606

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0158s00260.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.9	2.5e-31	6	73	1	68
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAear 68 +Ca+Ck+lrr+C+k+C++apyfp+++p+kfa+vhk+FGasnv+k+l++l ++r da+sslvyeA+ar Vradi0158s00260.1 6 PCASCKLLRRRCSKECIFAPYFPSDDPRKFAIVHKVFGASNVSKMLQELGVDQRADAVSSLVYEANAR 73 7******************************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.015	5	90	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-30	6	74	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 91 aa Download sequence Send to blast
MGGTSPCASC KLLRRRCSKE CIFAPYFPSD DPRKFAIVHK VFGASNVSKM LQELGVDQRA 60 DAVSSLVYEA NARWLKQRFY AFRCSNKKLP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-30	2	73	7	78	LOB family transfactor Ramosa2.1
5ly0_B	7e-30	2	73	7	78	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0158s00260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	1e-67	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022632856.1	7e-48	LOB domain-containing protein 12
Swissprot	Q8LBW3	8e-40	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A3Q0EP48	2e-46	A0A3Q0EP48_VIGRR; LOB domain-containing protein 12
STRING	GLYMA18G06530.1	2e-44	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-42	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]