PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0108s00120.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NF-YB

Protein Properties

Length: 203aa MW: 21977.5 Da PI: 6.5146

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0108s00120.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	167	2.3e-52	26	123	2	94
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse.....asdkcqrekrktingddllwalatlGfedyveplkvylk 88 reqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tse asdkcqrekrktingddllwa+atlGfe+yv+plk+yl+ Vradi0108s00120.1 26 REQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEyaaspASDKCQREKRKTINGDDLLWAMATLGFEEYVDPLKIYLA 117 89******************************************998877789********************************* PP NF-YB 89 kyrele 94 yre + Vradi0108s00120.1 118 SYREGD 123 *965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.5E-50	22	134	IPR009072	Histone-fold
SuperFamily	SSF47113	3.46E-35	28	133	IPR009072	Histone-fold
Pfam	PF00808	2.0E-24	31	100	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.3E-17	59	77	No hit	No description
PRINTS	PR00615	5.3E-17	83	101	No hit	No description
PRINTS	PR00615	5.3E-17	102	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MADAPASPGG GGSHESGEHS PRSNFREQDR FLPIANISRI MKKALPANGK IAKDAKETVQ 60 ECVSEFISFI TSEYAASPAS DKCQREKRKT INGDDLLWAM ATLGFEEYVD PLKIYLASYR 120 EGDSKGSAKG GESSSKRDVY PNPNVQLAHQ GSFSQGLLGS CIGDRVVAFF SDFRPQAPGS 180 TTYDCSHARP RVDIDLPETR VI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	9e-45	24	121	1	93	NF-YB
4awl_B	9e-45	24	121	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	9e-45	24	121	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0108s00120.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-120	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027934385.1	1e-103	nuclear transcription factor Y subunit B-1-like isoform X2
Swissprot	Q8VYK4	4e-71	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A4D6MXJ7	1e-133	A0A4D6MXJ7_VIGUN; Nuclear transcription factor Y
STRING	GLYMA19G36220.2	5e-94	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2545	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53340.1	9e-63	nuclear factor Y, subunit B10

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]