PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0073s00030.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 442aa    MW: 50124.5 Da    PI: 8.4071
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0073s00030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.4e-13259302755
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          Er+RR++i++++++Lr+l+Pk      +K++ a+iL  Av+YIk+Lq
  Vradi0073s00030.1 259 VTERNRRNKIKKGLFTLRSLVPKI-----TKMDRAAILADAVDYIKELQ 302
                        57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.29E-13250306No hitNo description
PROSITE profilePS5088814.951252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-16252319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-15258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-17259317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-11259302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MRGLGVVEWL RPLVETNVWD YVVVWKYGDD PTRFIEWVGC CCRGSCSVKI GVESKEEKGE  60
ECHLSPICRD NYLQHHDSIG TQVLIPIVGG LIELFTEKLI PMDMNIIEFI TAHGCVSLKQ  120
EAISAQSYTS LNIIEHLPLR EQYSHWWLPH MSATLTPSVH QPATKQCTSH PSIEGPPSGS  180
NPSTEEPSFD SKFVGLIPDE YLKQSTKMSP IPKTKMPKYS KTSGKQQIGL SSHCSDEEED  240
KSKLVKEPQK ERYQAKNLVT ERNRRNKIKK GLFTLRSLVP KITKMDRAAI LADAVDYIKE  300
LQAQVKELKD EATALEVQNC KNTPKSRKTA DKEQERTRSN TLNQSSSDCT KKMQMEVQAE  360
VHYIGKKDFL IKLYCEHKQG RFSKLIESIH SIGLQVASAN MTTFDDKVLN ILTVKATKKD  420
IHPTKLKEYL IQMTSDDRQS R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262269NRRNKIKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0073s00030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022632474.10.0transcription factor bHLH90
TrEMBLA0A3Q0EPX90.0A0A3Q0EPX9_VIGRR; transcription factor bHLH90
STRINGXP_007153735.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-51bHLH family protein