PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0023s00960.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARR-B
Protein Properties Length: 222aa    MW: 25807.6 Da    PI: 7.9272
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0023s00960.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like45.22e-141181482555
            G2-like  25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        + A+Pk++lelm+++gLt++hv SHLQkYR 
  Vradi0023s00960.1 118 HDAVPKKVLELMNMPGLTRNHVGSHLQKYRN 148
                        469***************************6 PP
2Response_reg26.63e-1015949109
                        EESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
       Response_reg  49 lDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                        + + mp+mdG+e+l  ++++e ++pii+++  ++++ + + +k+G+ d+  Kp ++++l +
  Vradi0023s00960.1   1 MEVHMPKMDGYEFL--LANQEIDVPIIMMSWDDNKKSIMKSIKLGGCDYWIKPLHEDRLKN 59 
                        6789*********7..8899999**********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.9E-16187No hitNo description
PfamPF000721.4E-7160IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011020.01165IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.85E-13174IPR011006CheY-like superfamily
CDDcd001561.47E-9164No hitNo description
Gene3DG3DSA:1.10.10.605.3E-14106152IPR009057Homeodomain-like
SuperFamilySSF466891.97E-10106152IPR009057Homeodomain-like
TIGRFAMsTIGR015577.9E-11120148IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEVHMPKMDG YEFLLANQEI DVPIIMMSWD DNKKSIMKSI KLGGCDYWIK PLHEDRLKNM  60
WTHVVRKSMS ENRMRKDHFS GNSEFVSSST LEISRKVDNV GESHSRKKSR MVWTSELHDA  120
VPKKVLELMN MPGLTRNHVG SHLQKYRNTL KRKPQQSATD IPLHNHLHAE EALNMALDHP  180
MPPYTANFVF PQSSETMPNN VSVDTLQEQQ QMQQWMESFF L*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0023s00960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-120AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521971.11e-152two-component response regulator ORR21-like
SwissprotA2XE316e-34ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S76e-34ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A1S3VUB11e-150A0A1S3VUB1_VIGRR; two-component response regulator ORR21-like
STRINGXP_007131372.13e-63(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14524517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-34response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]