PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0037s0106.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family Dof
Protein Properties Length: 680aa    MW: 68827 Da    PI: 8.3036
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0037s0106.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1054.1e-3394153261
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          +ek+ +cprC+s +tkfCyynny+++qPr++Ck+C+ryWt+GG+lrn+  G+grrk+k++
  Vocar.0037s0106.1.p  94 PEKKETCPRCNSLDTKFCYYNNYNIKQPRFYCKTCQRYWTAGGTLRNIAPGSGRRKSKSK 153
                          68899****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2391151IPR003851Zinc finger, Dof-type
PfamPF027011.4E-2896152IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.57498152IPR003851Zinc finger, Dof-type
PROSITE patternPS013610100136IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MEGASRDTVS TSGQLEDWAA GVAADLNEER EEKAREPRRQ TGDRDVTSPS RVRNGNNQSS  60
AVAKRARQLQ ERDSSPDDDN AAKDSGPRQK LPRPEKKETC PRCNSLDTKF CYYNNYNIKQ  120
PRFYCKTCQR YWTAGGTLRN IAPGSGRRKS KSKAAGREQR SSPSLADHIT AAAAVAHTGM  180
FGLPVNTPAP YSGLNPALLA AADPTGILTN GSATSAAYAH QQLLGGHGGL AGLKLAGVSQ  240
LHGGQWAGGN GLTSDLSGSA ALREHLQAHL AGGAPMSSSL VANGHQGMNG IDARTLLNGD  300
DLPVALALAQ SQLGNGGQRP SPPGSPPPQA QQQASSPQQP NSQQSQQPSP PQAPQNGGIS  360
DDPDADGNMD GAEIVVQGRR LRRKAELENA GSSNGYVGGV GSGASVSGSQ LAGLHLPPSM  420
ASLAAVMGPG GGSSSLGNNL HPLLCSQENG GLLDGAQSSL SRHNLQIALQ QHQMAQTHDS  480
LQQLNGLLPT SSVALHPLLH GLGHQGGNPS AAASNTAAAA AVAALDPLQR SALLQQAAGL  540
GGMGWLQGGS SMLQSSLLLQ VPSQFSSMNA SGNSGAADWL SLAAAAAAKV HAPAAAHGAI  600
DHGTGGVVGA AQMLQAQAAA FAAAGGCSSG VGWPSSASFA ALPSGGPSWS LWSSYNGSVP  660
SSYAGYALQA AAAAYSGGR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002958128.10.0Dof-type zinc finger protein
TrEMBLD8UHI70.0D8UHI7_VOLCA; Dof-type zinc finger protein
STRINGXP_002958128.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46551111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-27cycling DOF factor 2