PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g18580.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YB
Protein Properties Length: 280aa    MW: 30810.9 Da    PI: 6.1167
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g18580.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1741.5e-54115211197
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl++yl++yreleg
  Vang11g18580.1 115 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYMEPLTMYLHRYRELEG 209
                     69********************************************************************************************* PP

           NF-YB  96 ek 97 
                     ++
  Vang11g18580.1 210 DR 211
                     97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.0E-50110216IPR009072Histone-fold
SuperFamilySSF471132.48E-38118216IPR009072Histone-fold
PfamPF008086.9E-26121185IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.6E-16149167No hitNo description
PROSITE patternPS006850152168IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.6E-16168186No hitNo description
PRINTSPR006151.6E-16187205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEAFMATASS PTPPTLLNRT SGTHACMQLL TCLLQVAFMH SAASDIRIQG SVSIPQVSFT  60
LLPGHGVLGL QIYLHALYAD SNPAINVFEQ ALSPASGENN NNNHAADETN NECTVREQDR  120
FMPIANVIRI MRKILPPHAK ISDDAKETIQ ECVSEYISFI TGEANERCQR EQRKTITAED  180
VLWAMSKLGF DDYMEPLTMY LHRYRELEGD RTSMRGESLG KRTIEYAPMG VGVPTAFVPP  240
PFHPNGYYAP AMGTYVAPPN PASSHHHGMP STEPNSRSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A6e-62114206597NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g18580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017410606.11e-138PREDICTED: nuclear transcription factor Y subunit B-6-like isoform X1
RefseqXP_017410677.11e-138PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X2
TrEMBLA0A0L9TTH41e-137A0A0L9TTH4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RA331e-137A0A0S3RA33_PHAAN; Uncharacterized protein
STRINGXP_007154053.11e-123(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27283279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.23e-67nuclear factor Y, subunit B6