PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g13480.1 | ||||||||
Common Name | LR48_Vigan07g140700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YA | ||||||||
Protein Properties | Length: 230aa MW: 25078 Da PI: 9.9503 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 105.8 | 3.8e-33 | 76 | 132 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle+++kl +ksrkpylheSRh+hAl+R RgsgGrF Vang11g13480.1 76 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKSRKPYLHESRHRHALKRVRGSGGRF 132 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 9.3E-37 | 74 | 135 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.971 | 75 | 135 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 6.0E-25 | 78 | 100 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.8E-28 | 78 | 132 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 80 | 100 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 6.0E-25 | 109 | 132 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MKPFFLSNHP DTTMYNCSQV DFSHSMAHTP YPCGDPYFAS SIVAYGPQAI NQPQIIPQML 60 GLASTRIALP VELAEDGPIY VNAKQYHGIL RRRQSRAKLE AQNKLIKSRK PYLHESRHRH 120 ALKRVRGSGG RFLSAKQLES NAEHVDNNSH SGQKKDASEV ESHNSRTAEN ASITFTAISG 180 LTTMSSNSLN FRQPEHNFLG NSSNMGGSSQ CSGGLTFGGG TRQCASVGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-23 | 76 | 140 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 125 | RHRHALKRVR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g13480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007154608.1 | 1e-151 | hypothetical protein PHAVU_003G133100g | ||||
TrEMBL | A0A0L9UY39 | 1e-170 | A0A0L9UY39_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R8D3 | 1e-170 | A0A0S3R8D3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007154608.1 | 1e-150 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6949 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 2e-38 | nuclear factor Y, subunit A3 |
Publications ? help Back to Top | |||
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