PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g11490.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 413aa    MW: 47184.7 Da    PI: 7.5438
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g11490.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.61.4e-2272115245
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                     + e+ snr+vt+skR+ gilKKA+ELS+LCd+++++++fs+tgk
  Vang11g11490.1  72 KLESISNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGK 115
                     57899*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.98363115IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-2863122IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-2464157IPR002100Transcription factor, MADS-box
CDDcd002663.20E-2464146No hitNo description
PRINTSPR004041.9E-166585IPR002100Transcription factor, MADS-box
PfamPF003193.2E-1974116IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-1685100IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-16100121IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MCMRRKREEN VLVLLVEEVF VAWCQRLGSP KSHPSYSCYE LGWFPKLYPP KSQLYLSSFN  60
NLMGRVKLKI KKLESISNRH VTYSKRKSGI LKKAKELSIL CDIDILLLMF SPTGKPTLLQ  120
GERSNIEEVV AKFAQLSPQE RAKRKMESLE ALKKTFKKLD HDVKIQDFLG SSSQTVEELS  180
HQVRVLQAQL TEVHQRLSYW NNVEKINNLE HLRQMEESIR ESINRVGLQK ENLGKHQLIS  240
LECANQLQEG MALPLMMASL QESQPLSWLL NNDNHQLLLP NEPKFLPFSD NTNREVECST  300
DISLPSYSNY IGSNKLEVGS SPQVTLGQGG GAMNELNGTT YLNVQRCDQF TFPPQDIEEA  360
KHLPTLNNKS NTVDYQVNNF DLSGSLFENE HQFWNSASGS CGIAMYNENG YHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-1363154190MEF2 CHIMERA
6byy_B1e-1363154190MEF2 CHIMERA
6byy_C1e-1363154190MEF2 CHIMERA
6byy_D1e-1363154190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g11490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155298.10.0hypothetical protein PHAVU_003G189100g, partial
SwissprotQ7X9I09e-97AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A0S3R7D70.0A0A0S3R7D7_PHAAN; Uncharacterized protein
STRINGXP_007155298.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.13e-88AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]