PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g07370.1
Common NameLR48_Vigan01g227100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 517aa    MW: 58127.5 Da    PI: 6.008
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g07370.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.62.5e-1071455151374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalpps.etseknsseelaalklfsevsPilkf 93 
                     lv+lL++cAeav+ +d++ a+ lL++l+ +a   g+++qR+a++f+++L +rl+  + ++ ++ +pp  +  ++ s+e   a++l +e++P ++f
  Vang11g07370.1 145 LVQLLIACAEAVACRDKSHASILLSELKANALVFGSSFQRVASCFVQGLIERLNLiQPTGPVSPMPPMmNIMDTASEEMEEAFRLVYELCPHIQF 239
                     689**************************************************9944445566664440444445899999************** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                     +h+++N+ ++ea++ge+ vH++Df+++    +G QW  L+++La+   e   +lRiT+vg       ++l+++g+ L+ +A++lg++fef+v v 
  Vang11g07370.1 240 GHFVTNSIVMEAFSGESFVHVVDFGMTlglrHGHQWRELMRSLANGGsERLRRLRITAVGL-----CDRLQSIGDELSVYATNLGINFEFSV-VK 328
                     ************************8753333889**********76637778*********.....89***********************9.7* PP

            GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                     k+le+l++e+++v+++E+laVn++lqlh +++es    +   +vL++v +l Pkv+v+veq+++hn++ Fl rf+e+l+yysa+fdsl++ lp+ 
  Vang11g07370.1 329 KNLESLKPEDIEVREEEVLAVNSILQLHCVVKESRGALN---SVLQMVHGLGPKVLVMVEQDSSHNGPFFLGRFMESLHYYSAIFDSLDVMLPKY 420
                     *******************************88877777...8**************************************************** PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                     + +r+k+E++++++ei+n+v+ eg  r erhe++ +Wr+r+++aGF+++p++  +++qak  l + k  +gy+v ee+g+lvlgWk++p+v+vS+
  Vang11g07370.1 421 DTKRAKMEQFYFAEEIKNIVSREGPLRMERHERVDQWRRRMSRAGFQAAPIK--MVSQAKQWLLNGKvCEGYTVVEEKGCLVLGWKSKPIVAVSC 513
                     **************************************************96..677887766666668************************** PP

            GRAS 373 Wr 374
                     W+
  Vang11g07370.1 514 WK 515
                     *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.068119496IPR005202Transcription factor GRAS
PfamPF035148.8E-105145515IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MAPPQFGALN GEIDGENLSY VFDIWATDQY SCFPLQPISE SNSCTLVLPY CDGSIRDNKR  60
VKRTVGIPVD WLGNLMSNSH SFLNTNANNC NRSRDSIPKL HFRDHIRTYT QRYLAAEAEE  120
EAPEDINSSE SDGAEEDGCH DGVRLVQLLI ACAEAVACRD KSHASILLSE LKANALVFGS  180
SFQRVASCFV QGLIERLNLI QPTGPVSPMP PMMNIMDTAS EEMEEAFRLV YELCPHIQFG  240
HFVTNSIVME AFSGESFVHV VDFGMTLGLR HGHQWRELMR SLANGGSERL RRLRITAVGL  300
CDRLQSIGDE LSVYATNLGI NFEFSVVKKN LESLKPEDIE VREEEVLAVN SILQLHCVVK  360
ESRGALNSVL QMVHGLGPKV LVMVEQDSSH NGPFFLGRFM ESLHYYSAIF DSLDVMLPKY  420
DTKRAKMEQF YFAEEIKNIV SREGPLRMER HERVDQWRRR MSRAGFQAAP IKMVSQAKQW  480
LLNGKVCEGY TVVEEKGCLV LGWKSKPIVA VSCWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5415251426378Protein SCARECROW
5b3h_A1e-5415251425377Protein SCARECROW
5b3h_D1e-5415251425377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g07370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418911.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A0L9TQ800.0A0A0L9TQ80_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R5X20.0A0A0S3R5X2_PHAAN; Uncharacterized protein
STRINGXP_007155519.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-73RGA-like 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]