PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang09g05750.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SBP

Protein Properties

Length: 1032aa MW: 113821 Da PI: 7.1982

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang09g05750.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.1	7.8e-41	147	224	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Vang09g05750.1 147 VCQVEDCRADLSNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 224 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.6E-32	144	209	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.171	145	222	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.03E-38	146	226	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.8E-29	148	221	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	5.11E-7	800	916	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	9.3E-6	802	914	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.24E-7	803	913	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1032 aa Download sequence Send to blast
MEAQLEGKNQ YLYGPVVPEM KSVGKRSLEW DLNDWKWDGD LFTATQLNSL PSDCRSRQLF 60 PGDPEIRAAG DASNSLSSSY DNVNLAEGRR ELEKRRRGVA DEGGVEMNDG AGSLNLNLGV 120 QVYPIVEGEE KSGKKTKITG STLNRAVCQV EDCRADLSNA KDYHRRHKVC DMHSKASKAL 180 VGNVMQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNKRRR KTHPDASVVN DGSVNEEKGS 240 SYLLMSLLRI LSNMHSNGSD NMTSQDVLSH LLRNLASLAG TINGRNIVSL LEGSQDLVKA 300 GTSGTAQNVP KTNSNGPETS RPVDTSNKMD NGVISRDPPE SMIQCEMTPA NGMPKGFIGS 360 GSDGVGSSKS PSLPQLSNVL LSRDSLPPYS VSAETTVGRI GLSNIDLNSA YDDVQDYVEN 420 TRNSRPPLPS GNGSLDNPLW VQCDSLKSSP PQTSRNSDST STQSPSSSSG EAQSRTDRIV 480 FKLFGKAPND FPHALRSQIL NWLSHSPTEI ESYIRPGCII LTVYLRLENS AWEELCHNLG 540 SSLRKLAVPN DSFWRSGWIY TRVQHSVAFL YNGQVVLDVP LRFKSPQNCQ IFCVKPLAVS 600 SSSCVQFIVK GFNLLFSNTR LLCALEGKYL VQDSCYDLVD ADAAIGHNEL QHLSFSCSIP 660 NLSGRGFIEV EDNGLSSCSF PFIVAEQEIC SEICKLENVI EAAETADDIQ MKTKLMEEKT 720 QALYFVQEMG WLLHRTRAKV RLGPVAPLQD CFHFNRFMWL VGFSMDHDWC AVMKKLLNII 780 FEGTVDIGEH TSVELSLLKM DLLHKAVKRN CRPMVELLLK FVPANTSDGG DSKEKQVNKS 840 PNRFIFRPDS VGPSGLTPLH VAASMHGSDN VLDALTDDPG LVGIEAWKSA QDTTGLTPYD 900 HASLRGYYSY IQLVQTKISN TCKSEHVLNI PGTLVDSNIR QKQSDGHRSS KVSSLQTEKI 960 ETTAMVRHCG VCQHKLAYGG MRSALVYRPA MLSMVAIAAV CVCVALLFKS SPKVYFVFQP 1020 FSWESLEYGS M*

Sequence ? help Back to Top

Protein Sequence Length: 1032 aa Download sequence Send to blast

MEAQLEGKNQ YLYGPVVPEM KSVGKRSLEW DLNDWKWDGD LFTATQLNSL PSDCRSRQLF  60
PGDPEIRAAG DASNSLSSSY DNVNLAEGRR ELEKRRRGVA DEGGVEMNDG AGSLNLNLGV  120
QVYPIVEGEE KSGKKTKITG STLNRAVCQV EDCRADLSNA KDYHRRHKVC DMHSKASKAL  180
VGNVMQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNKRRR KTHPDASVVN DGSVNEEKGS  240
SYLLMSLLRI LSNMHSNGSD NMTSQDVLSH LLRNLASLAG TINGRNIVSL LEGSQDLVKA  300
GTSGTAQNVP KTNSNGPETS RPVDTSNKMD NGVISRDPPE SMIQCEMTPA NGMPKGFIGS  360
GSDGVGSSKS PSLPQLSNVL LSRDSLPPYS VSAETTVGRI GLSNIDLNSA YDDVQDYVEN  420
TRNSRPPLPS GNGSLDNPLW VQCDSLKSSP PQTSRNSDST STQSPSSSSG EAQSRTDRIV  480
FKLFGKAPND FPHALRSQIL NWLSHSPTEI ESYIRPGCII LTVYLRLENS AWEELCHNLG  540
SSLRKLAVPN DSFWRSGWIY TRVQHSVAFL YNGQVVLDVP LRFKSPQNCQ IFCVKPLAVS  600
SSSCVQFIVK GFNLLFSNTR LLCALEGKYL VQDSCYDLVD ADAAIGHNEL QHLSFSCSIP  660
NLSGRGFIEV EDNGLSSCSF PFIVAEQEIC SEICKLENVI EAAETADDIQ MKTKLMEEKT  720
QALYFVQEMG WLLHRTRAKV RLGPVAPLQD CFHFNRFMWL VGFSMDHDWC AVMKKLLNII  780
FEGTVDIGEH TSVELSLLKM DLLHKAVKRN CRPMVELLLK FVPANTSDGG DSKEKQVNKS  840
PNRFIFRPDS VGPSGLTPLH VAASMHGSDN VLDALTDDPG LVGIEAWKSA QDTTGLTPYD  900
HASLRGYYSY IQLVQTKISN TCKSEHVLNI PGTLVDSNIR QKQSDGHRSS KVSSLQTEKI  960
ETTAMVRHCG VCQHKLAYGG MRSALVYRPA MLSMVAIAAV CVCVALLFKS SPKVYFVFQP  1020
FSWESLEYGS M*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-30	147	221	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	216	222	KRRRKTH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang09g05750.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017406105.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12
TrEMBL	A0A0S3RH59	0.0	A0A0S3RH59_PHAAN; Uncharacterized protein
STRING	XP_007138555.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1