PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang09g01920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 399aa MW: 44772.7 Da PI: 6.51 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.9 | 4.1e-17 | 35 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +lv++vk++G g+W+++ + g+ R++k+c++rw ++l Vang09g01920.1 35 KGPWTPSEDAILVEYVKKHGEGNWNSVHKNSGLFRCGKSCRLRWANHL 82 79******************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.813 | 30 | 86 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 31 | 88 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-15 | 34 | 84 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.81E-20 | 35 | 121 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.1E-15 | 35 | 82 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.22E-12 | 37 | 82 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-6 | 104 | 121 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MARTVSNNDI TNDETGDDSN ATTKEEGEVK GRVRKGPWTP SEDAILVEYV KKHGEGNWNS 60 VHKNSGLFRC GKSCRLRWAN HLRPNLKKVQ PFSFFGFGSE HPLLPGRTDN EIKNFWNTRM 120 KRRQRAGLPI YPPELHAEAT AFNLQHRYLE DIPHSSFALL LSSCYPKKLD DPSQTNGFNA 180 NPLQNHPDSA NFYINPCLKH FKFSNDNGGS TNLALPLSPL SQYGSSSSTL LNHSFGDHGI 240 ISGSPYESFP LAQGLSHNNK SKNEEDPTLA GKLSCKRKNM EYADEGRTEP MVSAMKKNSS 300 NCTTTENQRD DDNSFSQLSK GKKVMREDPM EEMNSMDDDL FSLLNQFPLE TPMPEWYRRG 360 ESQSLGLENQ PNASPPDPAD QEYAWTLGTC WNNMPSIC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-15 | 35 | 123 | 7 | 107 | B-MYB |
1h8a_C | 2e-15 | 33 | 123 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang09g01920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014499553.1 | 0.0 | transcription factor MYB101-like | ||||
TrEMBL | A0A1S3U0K6 | 0.0 | A0A1S3U0K6_VIGRR; transcription factor MYB101-like | ||||
STRING | XP_007149977.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9949 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.1 | 2e-48 | myb domain protein 33 |