PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang07g07440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 795aa MW: 88379.8 Da PI: 4.7631 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.7 | 8.2e-11 | 656 | 699 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+W++++ el+++a+++lG++ ++ I + ++ +t+ q+k+++ k Vang07g07440.1 656 RGKWSKQDTELFYEAIRELGTD-FSMIQQLFP-DKTRRQIKLKYKK 699 89********************.*********.***********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 4.8E-26 | 649 | 733 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-7 | 652 | 699 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.337 | 654 | 702 | IPR017884 | SANT domain |
SMART | SM00717 | 1.1E-9 | 655 | 703 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.16E-10 | 657 | 703 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.75E-7 | 658 | 699 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 795 aa Download sequence Send to blast |
MNTSGNGAYA SALDLIHCLM DPFDDLLPEA PVARIRPGAK FAPKAKAKQR PRKEVPSSEH 60 ATSSKDAGNQ CQNVGPSTLN VPAKEYVGFI HHTQVHFPNS ESGNPEQVSV EGDSAALVDG 120 STITASDIGA GQNSTNFLES VCEAGPTDFD GDSVTNFVSE TNLNNVSAEI ELDPFSDILP 180 DLPARNVHKF KPKIKPRPRV GNMPASASCD VMMEKSVELP TSYSTDFQSF QSTSVLNQST 240 SLPLPTSEIL RKTYMPDKFG NTSSNVSISE DSKSLAAAIP SQLDSLNAML SGDAVHNGTR 300 DWPSTFGKSS GEAADIFSGL ESLDDFLTQA TTDTGKPALH SFNEKGAEEN FVTPVCSSIN 360 SFTECDNTQV QRCPEYHTPQ DPVTFNEATD LNESDTHTKN RMSETEEIED LNPAYPRDDV 420 FDYQSMKSGE DPTYGIPNKR SSISGEEDNG GKTSRQRRKL AACKPRNSSF NEDVEDDNDI 480 DPPYHSNEHE LQENDDDYEV DHSSKKKRGS KSSQKKSVAK SGKTSRRRKK ADDDLQKTKE 540 PPKKFSHSTR RKKRCVDKAL LEIPEDELDP RTLPIKDIIL LAEHRERQAK KDAMTSNMSP 600 SNQSGGDSLH GAGAYNEQEF SGSEDGGDPY DDQDNERIDS TPVLYNYHTF MEKTPRGKWS 660 KQDTELFYEA IRELGTDFSM IQQLFPDKTR RQIKLKYKKE EREHYLRLRD AIHNRAKDHS 720 HYNLLIERLQ QSSTKAEEVM DPTTGTNEEV VEAATIKHDV DVKEQEVSAA VQSPEEYDDS 780 EDDSLKWSQY KSLY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang07g07440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017407950.1 | 0.0 | PREDICTED: transcription factor TFIIIB component B'' isoform X1 | ||||
Refseq | XP_017407951.1 | 0.0 | PREDICTED: transcription factor TFIIIB component B'' isoform X1 | ||||
TrEMBL | A0A0S3T663 | 0.0 | A0A0S3T663_PHAAN; Uncharacterized protein | ||||
STRING | XP_007157057.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3666 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 2e-48 | MYB_related family protein |